Non-Coding RNA Search

rmcp05c_l15.y1

Sequence:


               
               AACATTAATTTTATAGGCAGATTTCCCACTTTCCCACCAGCCCCCACCCACACACATTCA
AGTTCACCCTCTGTGGGTGTCCCATGAACACCCCTTATTTTCTTATCATTAGTGGAGTCC
CTACCATACAATTCAATCAAATTGTAATGGACTCCTTTCAAATCAAGACCCTTGTTTACG
GTACAGAAAAATCTCATACATTATCACCAATTAATGACTTGGGACAAAACTTCCTCATTG
ACAGAATTATGGTCGAACCACCCATTTCCAAGAGTCTGGGTGAATAAAGTAATGAACATT
TTCTAGTTAGATTCTCCCTTAATTAGCACACCAGATACCTGTCTGTCACACAACCAGAAT
TGGGTTGCATGCCTTTATACTCCACTAGAGTTTTACTTTTAGAATTATCAGGTTTCCTAT
GCACAAAGTGCTCAATTGTTTCAGCAAAAGGTATCCCTTTGTACTCAGGCACAATACTAA
GCCTTCAGCATTTTAACAAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATTAATTTTATAGGCAGATTTCCCACTTTCCCACCAGCCCCCACCCACACACATTCA
AGTTCACCCTCTGTGGGTGTCCCATGAACACCCCTTATTTTCTTATCATTAGTGGAGTCC
CTACCATACAATTCAATCAAATTGTAATGGACTCCTTTCAAATCAAGACCCTTGTTTACG
GTACAGAAAAATCTCATACATTATCACCAATTAATGACTTGGGACAAAACTTCCTCATTG
ACAGAATTATGGTCGAACCACCCATTTCCAAGAGTCTGGGTGAATAAAGTAATGAACATT
TTCTAGTTAGATTCTCCCTTAATTAGCACACCAGATACCTGTCTGTCACACAACCAGAAT
TGGGTTGCATGCCTTTATACTCCACTAGAGTTTTACTTTTAGAATTATCAGGTTTCCTAT
GCACAAAGTGCTCAATTGTTTCAGCAAAAGGTATCCCTTTGTACTCAGGCACAATACTAA
GCCTTCAGCATTTTAACAAAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-349, - strand, RNAz p=0.995609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-349, - strand, RNAz p=0.995609

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-190, DA107275 BRACE3 Homo sapiens cDNA clone BRACE3021963 5', mRNA 
(dbj|DA107275.1|), blast E-value=0, identity=91.19% 
               

               
               1-190, DB281427 UTERU3 Homo sapiens cDNA clone UTERU3008386 5', mRNA 
(dbj|DB281427.1|), blast E-value=0, identity=91.19% 
               

               
               1-190, MR0-HT0448-270800-005-h06 HT0448 Homo sapiens cDNA, mRNA sequence 
(gb|BF351092.1|), blast E-value=0, identity=90.16% 
               

               
               1-349, CH3#028_H03T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU749770.1|), blast E-value=0, identity=88.33% 
               

               
               1-190, HESC4_11_B10.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone 
(gb|CX866525.1|), blast E-value=0, identity=91.19% 
               

               
               1-349, LB02810.CR_P11 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908391.1|), 
blast E-value=0, identity=89.24%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-190, DA107275 BRACE3 Homo sapiens cDNA clone BRACE3021963 5', mRNA 
(dbj|DA107275.1|), blast E-value=0, identity=91.19% 
               

               
               1-190, DB281427 UTERU3 Homo sapiens cDNA clone UTERU3008386 5', mRNA 
(dbj|DB281427.1|), blast E-value=0, identity=91.19% 
               

               
               1-190, MR0-HT0448-270800-005-h06 HT0448 Homo sapiens cDNA, mRNA sequence 
(gb|BF351092.1|), blast E-value=0, identity=90.16% 
               

               
               1-349, CH3#028_H03T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU749770.1|), blast E-value=0, identity=88.33% 
               

               
               1-190, HESC4_11_B10.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone 
(gb|CX866525.1|), blast E-value=0, identity=91.19% 
               

               
               1-349, LB02810.CR_P11 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908391.1|), 
blast E-value=0, identity=89.24%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-496, gnl|bosTau2|chr3 (77678056-77677573)
               

               
               1-496, gnl|Hg17|chr1 (35316819-35317322)
               

               
               1-496, gnl|Mm7|chr4 (126476547-126476073)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-496, gnl|bosTau2|chr3 (77678056-77677573)
               

               
               1-496, gnl|Hg17|chr1 (35316819-35317322)
               

               
               1-496, gnl|Mm7|chr4 (126476547-126476073)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	1-190, DA107275 BRACE3 Homo sapiens cDNA clone BRACE3021963 5', mRNA (dbj\|DA107275.1\|), blast E-value=0, identity=91.19%
	1-190, DB281427 UTERU3 Homo sapiens cDNA clone UTERU3008386 5', mRNA (dbj\|DB281427.1\|), blast E-value=0, identity=91.19%
	1-190, MR0-HT0448-270800-005-h06 HT0448 Homo sapiens cDNA, mRNA sequence (gb\|BF351092.1\|), blast E-value=0, identity=90.16%
	1-349, CH3#028_H03T3 Canine heart normalized cDNA Library in pBluescript (gb\|BU749770.1\|), blast E-value=0, identity=88.33%
	1-190, HESC4_11_B10.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone (gb\|CX866525.1\|), blast E-value=0, identity=91.19%
	1-349, LB02810.CR_P11 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV908391.1\|), blast E-value=0, identity=89.24%

	1-496, gnl\|bosTau2\|chr3 (77678056-77677573)
	1-496, gnl\|Hg17\|chr1 (35316819-35317322)
	1-496, gnl\|Mm7\|chr4 (126476547-126476073)