Non-Coding RNA Search

rmcp06c_b20.y1

Sequence:


               
               CTTCGCCTAGTGGTCTCTACAAAACTCACTTTTTCCTGCCGTGGAGAGAGTCTTTGAGAC
TCGCTTCCTTCTGCCCCCTGTTCCCTTTTCATCTGAGACTGCAAGATGAATGAGCTCACC
CAGAAGGCACATTCTTTATCCAAAACATCAACACACCCTCTTCCTTTGAAGAGCAGAATC
AAAGGAAAGCAAACAGGCGGCCCAAAGAAACCCATTGTGCAGGCTGGGAAGACCTGAGTT
GCCTTGGGAATGCTTGGATCTGAGCCGTTCAGGCAGCTTCAGCGAGTTTAGCCAGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGCCTAGTGGTCTCTACAAAACTCACTTTTTCCTGCCGTGGAGAGAGTCTTTGAGAC
TCGCTTCCTTCTGCCCCCTGTTCCCTTTTCATCTGAGACTGCAAGATGAATGAGCTCACC
CAGAAGGCACATTCTTTATCCAAAACATCAACACACCCTCTTCCTTTGAAGAGCAGAATC
AAAGGAAAGCAAACAGGCGGCCCAAAGAAACCCATTGTGCAGGCTGGGAAGACCTGAGTT
GCCTTGGGAATGCTTGGATCTGAGCCGTTCAGGCAGCTTCAGCGAGTTTAGCCAGGCAG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               22-299, gnl|bosTau2|chr4 (56170376-56170097)
               

               
               22-299, gnl|canFam2|chr16 (15425252-15424846)
               

               
               22-299, gnl|hg17|chr7 (134939023-134939436)
               

               
               22-299, gnl|Hg17|chr7 (134939084-134939351)
               

               
               22-299, gnl|loxAfr1|scaffold_58119 (10493-10907)
               

               
               22-299, gnl|mm7|chr6 (35311003-35311339)
               

               
               22-299, gnl|Mm7|chr6 (35311028-35311259)
               

               
               22-299, gnl|monDom2|scaffold_22 (7700613-7700202)
               

               
               22-299, gnl|oryCun1|scaffold_210733 (37023-37398)
               

               
               22-299, gnl|panTro1|chr6 (137644294-137644710)
               

               
               22-299, gnl|rheMac2|chr3 (173316032-173316439)
               

               
               22-299, gnl|rn3|chr4 (63058549-63058857)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-299, gnl|bosTau2|chr4 (56170376-56170097)
               

               
               22-299, gnl|canFam2|chr16 (15425252-15424846)
               

               
               22-299, gnl|hg17|chr7 (134939023-134939436)
               

               
               22-299, gnl|Hg17|chr7 (134939084-134939351)
               

               
               22-299, gnl|loxAfr1|scaffold_58119 (10493-10907)
               

               
               22-299, gnl|mm7|chr6 (35311003-35311339)
               

               
               22-299, gnl|Mm7|chr6 (35311028-35311259)
               

               
               22-299, gnl|monDom2|scaffold_22 (7700613-7700202)
               

               
               22-299, gnl|oryCun1|scaffold_210733 (37023-37398)
               

               
               22-299, gnl|panTro1|chr6 (137644294-137644710)
               

               
               22-299, gnl|rheMac2|chr3 (173316032-173316439)
               

               
               22-299, gnl|rn3|chr4 (63058549-63058857)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	22-299, gnl\|bosTau2\|chr4 (56170376-56170097)
	22-299, gnl\|canFam2\|chr16 (15425252-15424846)
	22-299, gnl\|hg17\|chr7 (134939023-134939436)
	22-299, gnl\|Hg17\|chr7 (134939084-134939351)
	22-299, gnl\|loxAfr1\|scaffold_58119 (10493-10907)
	22-299, gnl\|mm7\|chr6 (35311003-35311339)
	22-299, gnl\|Mm7\|chr6 (35311028-35311259)
	22-299, gnl\|monDom2\|scaffold_22 (7700613-7700202)
	22-299, gnl\|oryCun1\|scaffold_210733 (37023-37398)
	22-299, gnl\|panTro1\|chr6 (137644294-137644710)
	22-299, gnl\|rheMac2\|chr3 (173316032-173316439)
	22-299, gnl\|rn3\|chr4 (63058549-63058857)