Non-Coding RNA Search

rmcp09c_n20.y1

Sequence:


               
               GGCAGCGGCGCCAGCGGGAGCGGGCACAGAGTCGTCGGGCCTTCCAGGAGCTGGTGCTGG
AATCTGCCCAGCGGCGGGCGCGCTTGGAGGGACTGCGCTACTCGGCGGCGTTGAAGCAGC
AGGCAGCACAGCACTCGACCGCCCTGCTGCACTGGGGGGCTCTGTGGCGTCAGCTCTCCA
GCCCCTGTGGGCCCTGGGCCCTGAGGGACCCGCCCACCCCCCACTGGAAGCTGTCCAGTG
CCGAGACATATTCGCGCATGCGTCTGAAGCTGGTGCCCAACCATCACTTCAACCCTCACC
TGGAAGCCAGTGCCCTACGGGACAACCTGGGTGAGGCCCCCCTGACACCCACCGAGGAGG
CC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCGGCGCCAGCGGGAGCGGGCACAGAGTCGTCGGGCCTTCCAGGAGCTGGTGCTGG
AATCTGCCCAGCGGCGGGCGCGCTTGGAGGGACTGCGCTACTCGGCGGCGTTGAAGCAGC
AGGCAGCACAGCACTCGACCGCCCTGCTGCACTGGGGGGCTCTGTGGCGTCAGCTCTCCA
GCCCCTGTGGGCCCTGGGCCCTGAGGGACCCGCCCACCCCCCACTGGAAGCTGTCCAGTG
CCGAGACATATTCGCGCATGCGTCTGAAGCTGGTGCCCAACCATCACTTCAACCCTCACC
TGGAAGCCAGTGCCCTACGGGACAACCTGGGTGAGGCCCCCCTGACACCCACCGAGGAGG
CC

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               45-206, gnl|bosTau2|chr22 (41062864-41063025)
               

               
               45-206, gnl|canFam2|chr20 (44813099-44812971)
               

               
               45-206, gnl|danRer3|chr16 (9305154-9305026)
               

               
               45-206, gnl|fr1|chrUn (65670449-65670321)
               

               
               45-206, gnl|galGal2|chr7 (14518152-14518037)
               

               
               45-206, gnl|hg17|chr3 (47019137-47019265)
               

               
               45-206, gnl|Hg17|chr3 (47019136-47019297)
               

               
               45-206, gnl|loxAfr1|scaffold_71181 (5036-4908)
               

               
               45-206, gnl|mm7|chr9 (110329205-110329077)
               

               
               45-206, gnl|Mm7|chr9 (110329204-110329043)
               

               
               45-206, gnl|monDom2|scaffold_5 (81394481-81394609)
               

               
               45-206, gnl|oryCun1|scaffold_206213 (145849-145977)
               

               
               45-206, gnl|panTro1|chr2 (48477184-48477312)
               

               
               45-206, gnl|rheMac2|chr2 (89538681-89538553)
               

               
               45-206, gnl|rn3|chr8 (115031968-115031840)
               

               
               45-206, gnl|tetNig1|chr8 (6858215-6858340)
               

               
               45-206, gnl|xenTro1|scaffold_1568 (28674-28802)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-206, gnl|bosTau2|chr22 (41062864-41063025)
               

               
               45-206, gnl|canFam2|chr20 (44813099-44812971)
               

               
               45-206, gnl|danRer3|chr16 (9305154-9305026)
               

               
               45-206, gnl|fr1|chrUn (65670449-65670321)
               

               
               45-206, gnl|galGal2|chr7 (14518152-14518037)
               

               
               45-206, gnl|hg17|chr3 (47019137-47019265)
               

               
               45-206, gnl|Hg17|chr3 (47019136-47019297)
               

               
               45-206, gnl|loxAfr1|scaffold_71181 (5036-4908)
               

               
               45-206, gnl|mm7|chr9 (110329205-110329077)
               

               
               45-206, gnl|Mm7|chr9 (110329204-110329043)
               

               
               45-206, gnl|monDom2|scaffold_5 (81394481-81394609)
               

               
               45-206, gnl|oryCun1|scaffold_206213 (145849-145977)
               

               
               45-206, gnl|panTro1|chr2 (48477184-48477312)
               

               
               45-206, gnl|rheMac2|chr2 (89538681-89538553)
               

               
               45-206, gnl|rn3|chr8 (115031968-115031840)
               

               
               45-206, gnl|tetNig1|chr8 (6858215-6858340)
               

               
               45-206, gnl|xenTro1|scaffold_1568 (28674-28802)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	45-206, gnl\|bosTau2\|chr22 (41062864-41063025)
	45-206, gnl\|canFam2\|chr20 (44813099-44812971)
	45-206, gnl\|danRer3\|chr16 (9305154-9305026)
	45-206, gnl\|fr1\|chrUn (65670449-65670321)
	45-206, gnl\|galGal2\|chr7 (14518152-14518037)
	45-206, gnl\|hg17\|chr3 (47019137-47019265)
	45-206, gnl\|Hg17\|chr3 (47019136-47019297)
	45-206, gnl\|loxAfr1\|scaffold_71181 (5036-4908)
	45-206, gnl\|mm7\|chr9 (110329205-110329077)
	45-206, gnl\|Mm7\|chr9 (110329204-110329043)
	45-206, gnl\|monDom2\|scaffold_5 (81394481-81394609)
	45-206, gnl\|oryCun1\|scaffold_206213 (145849-145977)
	45-206, gnl\|panTro1\|chr2 (48477184-48477312)
	45-206, gnl\|rheMac2\|chr2 (89538681-89538553)
	45-206, gnl\|rn3\|chr8 (115031968-115031840)
	45-206, gnl\|tetNig1\|chr8 (6858215-6858340)
	45-206, gnl\|xenTro1\|scaffold_1568 (28674-28802)