Non-Coding RNA Search

rmcp15c_b15.y1

Sequence:


               
               GAGTCTTTGGGTGGATCCAGATGGTCATGAGTCCGTAGCTCCTGCTGGGAAAGGGAACTC
AGGTTGAGGGGAACCAGAGCGATCCCATGCTGATCAGAAAGAAGCAGATGTGCTCTACGT
GTCGAGAAATGAAAGTGAGAACATTCAATACAGACTGCCCATCCTGGGCCCCAGGACAGC
TGTCTTCCACGGACTGCTGTCAGATGCCTACCAATCTCTGCAGGAGACACAGCTCTCACC
CCTGCCCAGAAAGGAGCCAGTCGGCAAGACCGTGAGGCAGTGAGTGGCCGGAGTTTATCA
CCTCTAGACTCTCAGGGAGAAAGCAACCTAACCAAGCCAGTTTCTGACACTGATGCCCTC
TCATAACTTCCTCTTAAGCACAAAAAAGATGACTCAATTTTGCCTTCCTAACTGTTGCTA
GAATTCTAGCTCTTGCCGTTACCTTATTACTCATTTCTCCTAAAGACAAAATGGTTTAAT
ATACATGATTATAAAGATGAGTTGACTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCTTTGGGTGGATCCAGATGGTCATGAGTCCGTAGCTCCTGCTGGGAAAGGGAACTC
AGGTTGAGGGGAACCAGAGCGATCCCATGCTGATCAGAAAGAAGCAGATGTGCTCTACGT
GTCGAGAAATGAAAGTGAGAACATTCAATACAGACTGCCCATCCTGGGCCCCAGGACAGC
TGTCTTCCACGGACTGCTGTCAGATGCCTACCAATCTCTGCAGGAGACACAGCTCTCACC
CCTGCCCAGAAAGGAGCCAGTCGGCAAGACCGTGAGGCAGTGAGTGGCCGGAGTTTATCA
CCTCTAGACTCTCAGGGAGAAAGCAACCTAACCAAGCCAGTTTCTGACACTGATGCCCTC
TCATAACTTCCTCTTAAGCACAAAAAAGATGACTCAATTTTGCCTTCCTAACTGTTGCTA
GAATTCTAGCTCTTGCCGTTACCTTATTACTCATTTCTCCTAAAGACAAAATGGTTTAAT
ATACATGATTATAAAGATGAGTTGACTAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56417661|emb|CAI19056.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56417661|emb|CAI19056.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               292-404, - strand, RNAz p=0.607083

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               292-404, - strand, RNAz p=0.607083

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               137-511, gnl|bosTau2|chr16 (28687249-28687619)
               

               
               137-511, gnl|Hg17|chr1 (169169245-169169621)
               

               
               137-511, gnl|Mm7|chr1 (161905195-161904833)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-511, gnl|bosTau2|chr16 (28687249-28687619)
               

               
               137-511, gnl|Hg17|chr1 (169169245-169169621)
               

               
               137-511, gnl|Mm7|chr1 (161905195-161904833)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	137-511, gnl\|bosTau2\|chr16 (28687249-28687619)
	137-511, gnl\|Hg17\|chr1 (169169245-169169621)
	137-511, gnl\|Mm7\|chr1 (161905195-161904833)