Non-Coding RNA Search

rmcp16c_l24.y1

Sequence:


               
               AGGCCGCCCGCGAGCCTGCTGGGCTCGCCGGGGCCTGCCCGCAGCCCCTCCCTCAACAAC
GTCCCCAGCACCCCTGCCTCCACCATCTCCGCCCGCGAGGAGCTGGTTCAGCGCATCCCC
GAGGCCAGCCTCAACTTCCAGAAGGTGCCGCCCGGCTCCTTGAGCTCCCGAGACCTGGAC
CAGAACATGAACGACCGCTGCGAGGACCCCCTGGCCAACAAGACGCGGCCTCGGAACCGC
GAGGAGGTGATTTTCGACAACCTGATGCTGAACCCCGTGTCCCAGCTGTCCCACGCCATC
CGTGAGAACACCGAGCACCTGGCCGAGAAGATGAAGATCCTCTTTCAGAACACGGGGCGC
GCGTGGGAGGAGCTGGAAGCCAGGATCAACGCGGAGCACGAGGTGCCCATCCTGAAGACG
TCCAACAAGGAGATCAGCTCCATCCTGAAAGAACTGAGGCGAGTGCAGAAGCAGCTGGAA
GTCATCAACGCCATCGTGGACCCTGCTGGGAGCCTGGACGCGCTGCCTGGAAGCCGGGCC
TCCGCAGGCCCGGCCCAGCTCGGGAAAGGCTGGCCCGCTGCCCAGAGCCCGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCGCCCGCGAGCCTGCTGGGCTCGCCGGGGCCTGCCCGCAGCCCCTCCCTCAACAAC
GTCCCCAGCACCCCTGCCTCCACCATCTCCGCCCGCGAGGAGCTGGTTCAGCGCATCCCC
GAGGCCAGCCTCAACTTCCAGAAGGTGCCGCCCGGCTCCTTGAGCTCCCGAGACCTGGAC
CAGAACATGAACGACCGCTGCGAGGACCCCCTGGCCAACAAGACGCGGCCTCGGAACCGC
GAGGAGGTGATTTTCGACAACCTGATGCTGAACCCCGTGTCCCAGCTGTCCCACGCCATC
CGTGAGAACACCGAGCACCTGGCCGAGAAGATGAAGATCCTCTTTCAGAACACGGGGCGC
GCGTGGGAGGAGCTGGAAGCCAGGATCAACGCGGAGCACGAGGTGCCCATCCTGAAGACG
TCCAACAAGGAGATCAGCTCCATCCTGAAAGAACTGAGGCGAGTGCAGAAGCAGCTGGAA
GTCATCAACGCCATCGTGGACCCTGCTGGGAGCCTGGACGCGCTGCCTGGAAGCCGGGCC
TCCGCAGGCCCGGCCCAGCTCGGGAAAGGCTGGCCCGCTGCCCAGAGCCCGTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28839805|gb|AAH47913.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28839805|gb|AAH47913.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               101-247, gnl|bosTau2|chr21 (48853656-48853510)
               

               
               101-247, gnl|canFam2|chr8 (75441318-75441478)
               

               
               101-247, gnl|danRer3|chr25 (9827419-9827557)
               

               
               101-247, gnl|fr1|chrUn (60033107-60032970)
               

               
               101-247, gnl|galGal2|chr5 (48564070-48564217)
               

               
               101-247, gnl|hg17|chr14 (104430890-104431051)
               

               
               101-247, gnl|Hg17|chr14 (104430903-104431049)
               

               
               101-247, gnl|loxAfr1|scaffold_78089 (7965-8126)
               

               
               101-247, gnl|mm7|chr12 (110268334-110268494)
               

               
               101-247, gnl|Mm7|chr12 (110268346-110268492)
               

               
               101-247, gnl|monDom2|scaffold_6 (91791482-91791644)
               

               
               101-247, gnl|oryCun1|scaffold_147919 (4266-4426)
               

               
               101-247, gnl|rheMac2|chr7 (168271608-168271769)
               

               
               101-247, gnl|rn3|chr6 (137734943-137735107)
               

               
               101-247, gnl|tetNig1|chrUn_random (50530896-50531052)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-247, gnl|bosTau2|chr21 (48853656-48853510)
               

               
               101-247, gnl|canFam2|chr8 (75441318-75441478)
               

               
               101-247, gnl|danRer3|chr25 (9827419-9827557)
               

               
               101-247, gnl|fr1|chrUn (60033107-60032970)
               

               
               101-247, gnl|galGal2|chr5 (48564070-48564217)
               

               
               101-247, gnl|hg17|chr14 (104430890-104431051)
               

               
               101-247, gnl|Hg17|chr14 (104430903-104431049)
               

               
               101-247, gnl|loxAfr1|scaffold_78089 (7965-8126)
               

               
               101-247, gnl|mm7|chr12 (110268334-110268494)
               

               
               101-247, gnl|Mm7|chr12 (110268346-110268492)
               

               
               101-247, gnl|monDom2|scaffold_6 (91791482-91791644)
               

               
               101-247, gnl|oryCun1|scaffold_147919 (4266-4426)
               

               
               101-247, gnl|rheMac2|chr7 (168271608-168271769)
               

               
               101-247, gnl|rn3|chr6 (137734943-137735107)
               

               
               101-247, gnl|tetNig1|chrUn_random (50530896-50531052)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	101-247, gnl\|bosTau2\|chr21 (48853656-48853510)
	101-247, gnl\|canFam2\|chr8 (75441318-75441478)
	101-247, gnl\|danRer3\|chr25 (9827419-9827557)
	101-247, gnl\|fr1\|chrUn (60033107-60032970)
	101-247, gnl\|galGal2\|chr5 (48564070-48564217)
	101-247, gnl\|hg17\|chr14 (104430890-104431051)
	101-247, gnl\|Hg17\|chr14 (104430903-104431049)
	101-247, gnl\|loxAfr1\|scaffold_78089 (7965-8126)
	101-247, gnl\|mm7\|chr12 (110268334-110268494)
	101-247, gnl\|Mm7\|chr12 (110268346-110268492)
	101-247, gnl\|monDom2\|scaffold_6 (91791482-91791644)
	101-247, gnl\|oryCun1\|scaffold_147919 (4266-4426)
	101-247, gnl\|rheMac2\|chr7 (168271608-168271769)
	101-247, gnl\|rn3\|chr6 (137734943-137735107)
	101-247, gnl\|tetNig1\|chrUn_random (50530896-50531052)