Non-Coding RNA Search

rmcp19c_k14.y1

Sequence:


               
               CTGCAACCTGAGCTGCTTTCCTCCCTTGGGGAAGAGGAACTGACCCTCACAGAGGCCCTC
GTGGGGCTGAGTGGCCTGGAAGTGCAGCGATCAGGCCCCCAGTATACGTGGGACCCAGAC
ACTCTCCCCCATCTCTGTGCCCTCTATGCTGGCCTCTCCCTCATGCAGCTACTAAGCAAG
GCCTCCTAATTTGCAGTTCCCTTCCCTACCTCACTGTGCCATGTCCTAACACCCAAGGGC
ATTTCAGAGCCACCAGGCTGAGGATGGTGGAAACCCTAGCTGATCACCCAAGAGAACCAA
TTTCCACTTGTCCAACTCTGTGTATTCCCCTGCCCCTATGGCTCCACAACCCACCCGCTG
GCCTAAATCCTCTAAAAGTGGAAACTTTTGAAACTATGAATCATTTCAGCAAAGCCAAAA
ATAATTTCCTATCCCAAGCCCTCTCACTTCTGATTCCAAAAATGAAGCTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAACCTGAGCTGCTTTCCTCCCTTGGGGAAGAGGAACTGACCCTCACAGAGGCCCTC
GTGGGGCTGAGTGGCCTGGAAGTGCAGCGATCAGGCCCCCAGTATACGTGGGACCCAGAC
ACTCTCCCCCATCTCTGTGCCCTCTATGCTGGCCTCTCCCTCATGCAGCTACTAAGCAAG
GCCTCCTAATTTGCAGTTCCCTTCCCTACCTCACTGTGCCATGTCCTAACACCCAAGGGC
ATTTCAGAGCCACCAGGCTGAGGATGGTGGAAACCCTAGCTGATCACCCAAGAGAACCAA
TTTCCACTTGTCCAACTCTGTGTATTCCCCTGCCCCTATGGCTCCACAACCCACCCGCTG
GCCTAAATCCTCTAAAAGTGGAAACTTTTGAAACTATGAATCATTTCAGCAAAGCCAAAA
ATAATTTCCTATCCCAAGCCCTCTCACTTCTGATTCCAAAAATGAAGCTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.695275

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.695275

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-201, gnl|bosTau2|chr19 (34596253-34596053)
               

               
               1-201, gnl|canFam2|chr9 (25884171-25883881)
               

               
               1-201, gnl|dasNov1|scaffold_3272 (72126-71836)
               

               
               1-201, gnl|echTel1|scaffold_322583 (10414-10662)
               

               
               1-201, gnl|hg17|chr17 (35386539-35386826)
               

               
               1-201, gnl|Hg17|chr17 (35386649-35386849)
               

               
               1-201, gnl|loxAfr1|scaffold_8386 (26219-25961)
               

               
               1-201, gnl|mm7|chr11 (98785158-98785444)
               

               
               1-201, gnl|Mm7|chr11 (98785267-98785467)
               

               
               1-201, gnl|monDom2|scaffold_18 (49182392-49182681)
               

               
               1-201, gnl|oryCun1|scaffold_210513 (73401-73114)
               

               
               1-201, gnl|panTro1|chr19 (38624935-38625222)
               

               
               1-201, gnl|rheMac2|chr16 (50076335-50076622)
               

               
               1-201, gnl|rn3|chr10 (87464908-87465194)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-201, gnl|bosTau2|chr19 (34596253-34596053)
               

               
               1-201, gnl|canFam2|chr9 (25884171-25883881)
               

               
               1-201, gnl|dasNov1|scaffold_3272 (72126-71836)
               

               
               1-201, gnl|echTel1|scaffold_322583 (10414-10662)
               

               
               1-201, gnl|hg17|chr17 (35386539-35386826)
               

               
               1-201, gnl|Hg17|chr17 (35386649-35386849)
               

               
               1-201, gnl|loxAfr1|scaffold_8386 (26219-25961)
               

               
               1-201, gnl|mm7|chr11 (98785158-98785444)
               

               
               1-201, gnl|Mm7|chr11 (98785267-98785467)
               

               
               1-201, gnl|monDom2|scaffold_18 (49182392-49182681)
               

               
               1-201, gnl|oryCun1|scaffold_210513 (73401-73114)
               

               
               1-201, gnl|panTro1|chr19 (38624935-38625222)
               

               
               1-201, gnl|rheMac2|chr16 (50076335-50076622)
               

               
               1-201, gnl|rn3|chr10 (87464908-87465194)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	1-201, gnl\|bosTau2\|chr19 (34596253-34596053)
	1-201, gnl\|canFam2\|chr9 (25884171-25883881)
	1-201, gnl\|dasNov1\|scaffold_3272 (72126-71836)
	1-201, gnl\|echTel1\|scaffold_322583 (10414-10662)
	1-201, gnl\|hg17\|chr17 (35386539-35386826)
	1-201, gnl\|Hg17\|chr17 (35386649-35386849)
	1-201, gnl\|loxAfr1\|scaffold_8386 (26219-25961)
	1-201, gnl\|mm7\|chr11 (98785158-98785444)
	1-201, gnl\|Mm7\|chr11 (98785267-98785467)
	1-201, gnl\|monDom2\|scaffold_18 (49182392-49182681)
	1-201, gnl\|oryCun1\|scaffold_210513 (73401-73114)
	1-201, gnl\|panTro1\|chr19 (38624935-38625222)
	1-201, gnl\|rheMac2\|chr16 (50076335-50076622)
	1-201, gnl\|rn3\|chr10 (87464908-87465194)