Non-Coding RNA Search

rmcp21c_o18.y1

Sequence:


               
               CTCCTCTAGAGTAGCACAAAGGAGGTTGGTAGGGAAAGAATAGGACTGTCATCCTCAATG
TCTGCCACAGTGTTAGGCTAGCCTCAATCAGCCCTAGCAGCCAGCATTCATGTCTTATCT
CCAAACTGAGCTAAATCATTTCTGCAGCCATTTTAGCTTCAGCCTGCTTATATTTGGGAA
AATGAGTTCCTTTTAGCATCTCCTTTATTTGGCCTGTAGACCTTACTGTAGGGCACTAGG
AACACAGTGGTGAGGCCAACGGTGTTCGCTGTATTCACAACTCTTCTTTAAACTGCAGGC
TTAGATCATACCCCCCCTCAACCTCTGGCTTTTCAGATTGAAGGATCCCTAAGGCCCAGT
CTTGTAAGGGAGCTCTCATCCCCTTTAATGCAACAGTGGAGTGAGCTGAGTTTTCAAATC
AAATCAGCCATATGTTTTATGGTCCCTTATCTGGGTTGTAACTGGGGGCTTGGAGACCAT
TAGCCTATATATATATATATATACATACATATAATGTGCATTTATCCCCCAGTACATTAT
CTTACAATGGCCCATATTCGTCTCTCAATTCATCAAAAAATATTGGTTAAGCACCTAGTA
TGTACCCAGCACCATGCTAGGTGCTGTGGGGAACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTCTAGAGTAGCACAAAGGAGGTTGGTAGGGAAAGAATAGGACTGTCATCCTCAATG
TCTGCCACAGTGTTAGGCTAGCCTCAATCAGCCCTAGCAGCCAGCATTCATGTCTTATCT
CCAAACTGAGCTAAATCATTTCTGCAGCCATTTTAGCTTCAGCCTGCTTATATTTGGGAA
AATGAGTTCCTTTTAGCATCTCCTTTATTTGGCCTGTAGACCTTACTGTAGGGCACTAGG
AACACAGTGGTGAGGCCAACGGTGTTCGCTGTATTCACAACTCTTCTTTAAACTGCAGGC
TTAGATCATACCCCCCCTCAACCTCTGGCTTTTCAGATTGAAGGATCCCTAAGGCCCAGT
CTTGTAAGGGAGCTCTCATCCCCTTTAATGCAACAGTGGAGTGAGCTGAGTTTTCAAATC
AAATCAGCCATATGTTTTATGGTCCCTTATCTGGGTTGTAACTGGGGGCTTGGAGACCAT
TAGCCTATATATATATATATATACATACATATAATGTGCATTTATCCCCCAGTACATTAT
CTTACAATGGCCCATATTCGTCTCTCAATTCATCAAAAAATATTGGTTAAGCACCTAGTA
TGTACCCAGCACCATGCTAGGTGCTGTGGGGAACACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7PWX9_ANOGA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7PWX9_ANOGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               521-637, - strand, RNAz p=0.98019

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               521-637, - strand, RNAz p=0.98019

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-637, gnl|bosTau2|chr5 (33636765-33636162)
               

               
               2-637, gnl|Hg17|chr12 (54649739-54650694)
               

               
               2-637, gnl|Mm7|chr10 (128203002-128201842)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-637, gnl|bosTau2|chr5 (33636765-33636162)
               

               
               2-637, gnl|Hg17|chr12 (54649739-54650694)
               

               
               2-637, gnl|Mm7|chr10 (128203002-128201842)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	2-637, gnl\|bosTau2\|chr5 (33636765-33636162)
	2-637, gnl\|Hg17\|chr12 (54649739-54650694)
	2-637, gnl\|Mm7\|chr10 (128203002-128201842)