Non-Coding RNA Search

rmcp22c_b24.y1

Sequence:


               
               TTATAAAATTTCCGATAAAATAACTTTGAAGTTTTACAAGTAACTACCTCCCCTTCTGGT
CCTTATGTCCCTCCTTCAAAGCTGCTTACCATTTAGAAATGGAAGATGTCACATCTCATA
CTTGGACTCTTCTCAGTTGATGTACCCACCATGTGACATTCTGAATTTCAAATAACTATG
GTATGATTTTTGACGACATTGCTTTATGTGGTTCAAAAACTGTATGACACATCGAGATTT
ATAATCCTCCTATGGTGAAACTCACCATGTAATACCAATGACAATAATTATTTAATGACT
TAGAATCTGTCCATATGCGTTTCAATATGATGGTGTCTATGTCTGGAAAACAAAACAAAA
AAAATGTAATCATATCTTTCCATCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATAAAATTTCCGATAAAATAACTTTGAAGTTTTACAAGTAACTACCTCCCCTTCTGGT
CCTTATGTCCCTCCTTCAAAGCTGCTTACCATTTAGAAATGGAAGATGTCACATCTCATA
CTTGGACTCTTCTCAGTTGATGTACCCACCATGTGACATTCTGAATTTCAAATAACTATG
GTATGATTTTTGACGACATTGCTTTATGTGGTTCAAAAACTGTATGACACATCGAGATTT
ATAATCCTCCTATGGTGAAACTCACCATGTAATACCAATGACAATAATTATTTAATGACT
TAGAATCTGTCCATATGCGTTTCAATATGATGGTGTCTATGTCTGGAAAACAAAACAAAA
AAAATGTAATCATATCTTTCCATCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaa

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-331, - strand, RNAz p=0.768518

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-331, - strand, RNAz p=0.768518

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-380, gnl|bosTau2|chr19 (27945128-27944748)
               

               
               1-380, gnl|canFam2|chr4 (76475884-76475481)
               

               
               1-380, gnl|echTel1|scaffold_271633 (6916-6533)
               

               
               1-380, gnl|hg17|chr5 (35094337-35094740)
               

               
               1-380, gnl|Hg17|chr5 (35094850-35094461)
               

               
               1-380, gnl|loxAfr1|scaffold_52554 (4720-5113)
               

               
               1-380, gnl|mm7|chr15 (10397057-10396628)
               

               
               1-380, gnl|Mm7|chr15 (10396522-10396932)
               

               
               1-380, gnl|monDom2|scaffold_20 (37788357-37787951)
               

               
               1-380, gnl|panTro1|chr4 (81737180-81736773)
               

               
               1-380, gnl|rheMac2|chr6 (34824053-34824459)
               

               
               1-380, gnl|rn3|chr2 (59616204-59615805)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-380, gnl|bosTau2|chr19 (27945128-27944748)
               

               
               1-380, gnl|canFam2|chr4 (76475884-76475481)
               

               
               1-380, gnl|echTel1|scaffold_271633 (6916-6533)
               

               
               1-380, gnl|hg17|chr5 (35094337-35094740)
               

               
               1-380, gnl|Hg17|chr5 (35094850-35094461)
               

               
               1-380, gnl|loxAfr1|scaffold_52554 (4720-5113)
               

               
               1-380, gnl|mm7|chr15 (10397057-10396628)
               

               
               1-380, gnl|Mm7|chr15 (10396522-10396932)
               

               
               1-380, gnl|monDom2|scaffold_20 (37788357-37787951)
               

               
               1-380, gnl|panTro1|chr4 (81737180-81736773)
               

               
               1-380, gnl|rheMac2|chr6 (34824053-34824459)
               

               
               1-380, gnl|rn3|chr2 (59616204-59615805)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	1-380, gnl\|bosTau2\|chr19 (27945128-27944748)
	1-380, gnl\|canFam2\|chr4 (76475884-76475481)
	1-380, gnl\|echTel1\|scaffold_271633 (6916-6533)
	1-380, gnl\|hg17\|chr5 (35094337-35094740)
	1-380, gnl\|Hg17\|chr5 (35094850-35094461)
	1-380, gnl\|loxAfr1\|scaffold_52554 (4720-5113)
	1-380, gnl\|mm7\|chr15 (10397057-10396628)
	1-380, gnl\|Mm7\|chr15 (10396522-10396932)
	1-380, gnl\|monDom2\|scaffold_20 (37788357-37787951)
	1-380, gnl\|panTro1\|chr4 (81737180-81736773)
	1-380, gnl\|rheMac2\|chr6 (34824053-34824459)
	1-380, gnl\|rn3\|chr2 (59616204-59615805)