rmcp23c_m1.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCAACATGTATGCTATGAACCTGGCCCGCTATCAGCGCTACCCGGATTGCAAACAGAG GGGCCTCCGGGCACTGCCACCCCTGGCCCTCTTCACATCCAAGGAGTGTCATTACTCCAT CAAGAAGGGAGCTGCCTTTCTGGGACTTGGCACCGACAGTGTCCGAATAGTCCAGGCAGA TGAGAGAGGGAAAATGATCCCTGAGGATCTGGAGCAGCAGATCAGACTGGCTGAGGCTGA GGGTGCTGTGCCATTTCTGGTCAGTGCCACCTCTGGCACTACCGTGCTGGGGGCCTTTGA CCCCCTGGAGGCCATTGCTGATGTGTGCCAGCGTCACGGGCTGTGGCTGCACGTGGATGC CGCCTGGGGGGGGAGTGTTCTGCTGTCACAGACCCATCGACATCTTCTGGATGGGATCCA GAGGGCTGACTCCGTGGCCTGGAATCCCCACAAGCTCCTCTCCGTAGGCCTGCAGTGTTC GGCTCTCCTTCTCCGAGACACGTCGAACCTGCTCAAGCGCTGCCACGGGTCCCAGGCCAG CTACCTCTTCCAGCAGGACAAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCAACATGTATGCTATGAACCTGGCCCGCTATCAGCGCTACCCGGATTGCAAACAGAG GGGCCTCCGGGCACTGCCACCCCTGGCCCTCTTCACATCCAAGGAGTGTCATTACTCCAT CAAGAAGGGAGCTGCCTTTCTGGGACTTGGCACCGACAGTGTCCGAATAGTCCAGGCAGA TGAGAGAGGGAAAATGATCCCTGAGGATCTGGAGCAGCAGATCAGACTGGCTGAGGCTGA GGGTGCTGTGCCATTTCTGGTCAGTGCCACCTCTGGCACTACCGTGCTGGGGGCCTTTGA CCCCCTGGAGGCCATTGCTGATGTGTGCCAGCGTCACGGGCTGTGGCTGCACGTGGATGC CGCCTGGGGGGGGAGTGTTCTGCTGTCACAGACCCATCGACATCTTCTGGATGGGATCCA GAGGGCTGACTCCGTGGCCTGGAATCCCCACAAGCTCCTCTCCGTAGGCCTGCAGTGTTC GGCTCTCCTTCTCCGAGACACGTCGAACCTGCTCAAGCGCTGCCACGGGTCCCAGGCCAG CTACCTCTTCCAGCAGGACAAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-106, - strand, RNAz p=0.763975 | |
| 240-357, + strand, RNAz p=0.733746 | |
| 264-357, - strand, RNAz p=0.80068 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-106, - strand, RNAz p=0.763975 | |
| 240-357, + strand, RNAz p=0.733746 | |
| 264-357, - strand, RNAz p=0.80068 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF116545, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-106, gnl|bosTau2|chr5 (20591494-20591389) | |
| 1-106, gnl|canFam2|chr27 (5029603-5029475) | |
| 1-106, gnl|danRer3|chr23 (49466617-49466741) | |
| 1-106, gnl|dasNov1|scaffold_38862 (5567-5696) | |
| 1-106, gnl|echTel1|scaffold_320535 (339-211) | |
| 1-106, gnl|fr1|chrUn (93796113-93795991) | |
| 1-106, gnl|hg17|chr12 (51851366-51851495) | |
| 1-106, gnl|Hg17|chr12 (51851482-51851377) | |
| 1-106, gnl|mm7|chr15 (102173200-102173329) | |
| 1-106, gnl|Mm7|chr15 (102173316-102173211) | |
| 1-106, gnl|monDom2|scaffold_168 (950253-950380) | |
| 1-106, gnl|oryCun1|scaffold_192238 (44725-44854) | |
| 1-106, gnl|panTro1|chr10 (53086145-53086274) | |
| 1-106, gnl|rheMac2|chr11 (50221295-50221424) | |
| 1-106, gnl|rn3|chr7 (141018993-141019122) | |
| 1-106, gnl|tetNig1|chr9 (4333082-4333207) | |
| 1-106, gnl|xenTro1|scaffold_280 (1460961-1461090) | |
| 240-357, gnl|bosTau2|chr5 (20557345-20557462) | |
| 240-357, gnl|canFam2|chr27 (5037198-5037022) | |
| 240-357, gnl|danRer3|chr14 (42610838-42610695) | |
| 240-357, gnl|dasNov1|scaffold_110738 (4402-4231) | |
| 240-357, gnl|echTel1|scaffold_306191 (442-263) | |
| 240-357, gnl|fr1|chrUn (93796704-93796579) | |
| 240-357, gnl|hg17|chr12 (51841314-51841490) | |
| 240-357, gnl|Hg17|chr12 (51841442-51841325) | |
| 240-357, gnl|loxAfr1|scaffold_525 (17433-17308) | |
| 240-357, gnl|mm7|chr15 (102166118-102166296) | |
| 240-357, gnl|Mm7|chr15 (102166246-102166129) | |
| 240-357, gnl|monDom2|scaffold_168 (949002-949154) | |
| 240-357, gnl|oryCun1|scaffold_192238 (37206-37384) | |
| 240-357, gnl|panTro1|chr10 (53076133-53076309) | |
| 240-357, gnl|rheMac2|chr11 (50210759-50210935) | |
| 240-357, gnl|rn3|chr7 (140997339-140997514) | |
| 240-357, gnl|tetNig1|chr9 (4332495-4332620) | |
| 240-357, gnl|xenTro1|scaffold_280 (1457952-1458102) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-106, gnl|bosTau2|chr5 (20591494-20591389) | |
| 1-106, gnl|canFam2|chr27 (5029603-5029475) | |
| 1-106, gnl|danRer3|chr23 (49466617-49466741) | |
| 1-106, gnl|dasNov1|scaffold_38862 (5567-5696) | |
| 1-106, gnl|echTel1|scaffold_320535 (339-211) | |
| 1-106, gnl|fr1|chrUn (93796113-93795991) | |
| 1-106, gnl|hg17|chr12 (51851366-51851495) | |
| 1-106, gnl|Hg17|chr12 (51851482-51851377) | |
| 1-106, gnl|mm7|chr15 (102173200-102173329) | |
| 1-106, gnl|Mm7|chr15 (102173316-102173211) | |
| 1-106, gnl|monDom2|scaffold_168 (950253-950380) | |
| 1-106, gnl|oryCun1|scaffold_192238 (44725-44854) | |
| 1-106, gnl|panTro1|chr10 (53086145-53086274) | |
| 1-106, gnl|rheMac2|chr11 (50221295-50221424) | |
| 1-106, gnl|rn3|chr7 (141018993-141019122) | |
| 1-106, gnl|tetNig1|chr9 (4333082-4333207) | |
| 1-106, gnl|xenTro1|scaffold_280 (1460961-1461090) | |
| 240-357, gnl|bosTau2|chr5 (20557345-20557462) | |
| 240-357, gnl|canFam2|chr27 (5037198-5037022) | |
| 240-357, gnl|danRer3|chr14 (42610838-42610695) | |
| 240-357, gnl|dasNov1|scaffold_110738 (4402-4231) | |
| 240-357, gnl|echTel1|scaffold_306191 (442-263) | |
| 240-357, gnl|fr1|chrUn (93796704-93796579) | |
| 240-357, gnl|hg17|chr12 (51841314-51841490) | |
| 240-357, gnl|Hg17|chr12 (51841442-51841325) | |
| 240-357, gnl|loxAfr1|scaffold_525 (17433-17308) | |
| 240-357, gnl|mm7|chr15 (102166118-102166296) | |
| 240-357, gnl|Mm7|chr15 (102166246-102166129) | |
| 240-357, gnl|monDom2|scaffold_168 (949002-949154) | |
| 240-357, gnl|oryCun1|scaffold_192238 (37206-37384) | |
| 240-357, gnl|panTro1|chr10 (53076133-53076309) | |
| 240-357, gnl|rheMac2|chr11 (50210759-50210935) | |
| 240-357, gnl|rn3|chr7 (140997339-140997514) | |
| 240-357, gnl|tetNig1|chr9 (4332495-4332620) | |
| 240-357, gnl|xenTro1|scaffold_280 (1457952-1458102) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) |