Non-Coding RNA Search

rmcp23c_o15.y1

Sequence:


               
               CAGGCATTAAAATTTTGCTTGGCGTTACTCAAAAGCAAAAGTAAAAGGAAGAAATAAGAA
CAAGGAGAAAGATTGTATTGATTTTAAAATCATGCAAAAACTGCAAATCTATGTTTATAT
TTACCTGTTTATGCTGATTGTTGCTGGTCCCGTGGATCTGAATGAGAACAGCGAGCAAAA
GGAAAATGTGGAAAAAGAGGGGCTGTGTAATGCATGTATGTGGAGACAAAACACTAAATC
TTCAAGACTAGAAGCCATAAAAATTCAAATCCTCAGTAAACTTCGCCTGGAAACAGCTCC
TAACATTAGCAAAGATGCTATAAGACAACTTTTGCCCAAAGCTCCTCCACTCCGGGAACT
GATTGATCAGTACGATGTCCAGAGAGATGACAGCAGTGATGGCTCCTTGGAAGATGATGA
TTATCACGCTACGACGGAAACGATCATTACCATGCCTACAGAGTCTGATCTTCTAATGCA
AGTGGAAGGAAAACCCAAATGCTGCTTCTTTAAATTTAGCTCTAAAATACAATACAATAA
AGTAGTAAAGGCCCAACTGTGGATATATCTGAGACCCGTCAAGACTCCTACAACAGTGTT
TGTGCAAATCCTGAGACTCATCAAACCCATGAAAGACGGTACAAGAATCCCTTTTTAGAA
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCATTAAAATTTTGCTTGGCGTTACTCAAAAGCAAAAGTAAAAGGAAGAAATAAGAA
CAAGGAGAAAGATTGTATTGATTTTAAAATCATGCAAAAACTGCAAATCTATGTTTATAT
TTACCTGTTTATGCTGATTGTTGCTGGTCCCGTGGATCTGAATGAGAACAGCGAGCAAAA
GGAAAATGTGGAAAAAGAGGGGCTGTGTAATGCATGTATGTGGAGACAAAACACTAAATC
TTCAAGACTAGAAGCCATAAAAATTCAAATCCTCAGTAAACTTCGCCTGGAAACAGCTCC
TAACATTAGCAAAGATGCTATAAGACAACTTTTGCCCAAAGCTCCTCCACTCCGGGAACT
GATTGATCAGTACGATGTCCAGAGAGATGACAGCAGTGATGGCTCCTTGGAAGATGATGA
TTATCACGCTACGACGGAAACGATCATTACCATGCCTACAGAGTCTGATCTTCTAATGCA
AGTGGAAGGAAAACCCAAATGCTGCTTCTTTAAATTTAGCTCTAAAATACAATACAATAA
AGTAGTAAAGGCCCAACTGTGGATATATCTGAGACCCGTCAAGACTCCTACAACAGTGTT
TGTGCAAATCCTGAGACTCATCAAACCCATGAAAGACGGTACAAGAATCCCTTTTTAGAA
G

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15529474|gb|AAL01300.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15529474|gb|AAL01300.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-353, - strand, RNAz p=0.6407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-353, - strand, RNAz p=0.6407

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-468, gnl|bosTau2|chr2 (3990419-3990891)
               

               
               1-468, gnl|Hg17|chr2 (190752924-190752452)
               

               
               1-468, gnl|Mm7|chr1 (53295200-53295667)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr2 (3990419-3990891)
               

               
               1-468, gnl|Hg17|chr2 (190752924-190752452)
               

               
               1-468, gnl|Mm7|chr1 (53295200-53295667)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	1-468, gnl\|bosTau2\|chr2 (3990419-3990891)
	1-468, gnl\|Hg17\|chr2 (190752924-190752452)
	1-468, gnl\|Mm7\|chr1 (53295200-53295667)