Non-Coding RNA Search

rmcp23c_o23.y1

Sequence:


               
               GAGTCCCTGGCACAGACATGGTTTCGACTTGTGACGTGCTGGCTTCACGTGGTCAGACAC
CGCCTCTGTAGTCTCCTCACACACCATGACCTGTCAACTCCCACCCTGTACCGCGGTCTC
CCTCCAAGTCTCAAGAAAGGGAGGATCCGGTATCTGTGCTTCTTGTCCCAGAGCAGTGGG
TTTGGACCTACGAGCACAGACAACAGAACTACCCGTGGAGAAAGGAGAAGGGATGCCTTT
CAGTGAGACTGAGGGAGTGAGGGAAAGAGGGCGAGGTGATGCAGATCTGGCCATTCAAGA
ATTCTTCTTCAGAGAGCGCTCTCAGATGCCAGCACACTTGAGAATAGTGAGTCTGGAATT
ATGTTAACATATTGGAACCTCCATGGAGACTGGGATGGTGAAAGAGCAATTTGAAGAGTC
GACTTTCGAAATTGTCAAAGAAATTGATGAGGTACCCCTGCTTGCCAAGAAGGGGCTTAT
GCAATACCTCTGACTGCACGTAAGAGGAACTGTAGGAGGGGGCTTCGTGAAATCTATAAC
TGAAGTGGCTCCTTCTTCTCTTCCTGTCAAGCTGGCCATTCTGACATCTATTAACTAATA
CATGCAAGTGGGGTAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCCCTGGCACAGACATGGTTTCGACTTGTGACGTGCTGGCTTCACGTGGTCAGACAC
CGCCTCTGTAGTCTCCTCACACACCATGACCTGTCAACTCCCACCCTGTACCGCGGTCTC
CCTCCAAGTCTCAAGAAAGGGAGGATCCGGTATCTGTGCTTCTTGTCCCAGAGCAGTGGG
TTTGGACCTACGAGCACAGACAACAGAACTACCCGTGGAGAAAGGAGAAGGGATGCCTTT
CAGTGAGACTGAGGGAGTGAGGGAAAGAGGGCGAGGTGATGCAGATCTGGCCATTCAAGA
ATTCTTCTTCAGAGAGCGCTCTCAGATGCCAGCACACTTGAGAATAGTGAGTCTGGAATT
ATGTTAACATATTGGAACCTCCATGGAGACTGGGATGGTGAAAGAGCAATTTGAAGAGTC
GACTTTCGAAATTGTCAAAGAAATTGATGAGGTACCCCTGCTTGCCAAGAAGGGGCTTAT
GCAATACCTCTGACTGCACGTAAGAGGAACTGTAGGAGGGGGCTTCGTGAAATCTATAAC
TGAAGTGGCTCCTTCTTCTCTTCCTGTCAAGCTGGCCATTCTGACATCTATTAACTAATA
CATGCAAGTGGGGTAAAGT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               149-265, gnl|bosTau2|chr5 (9246778-9246660)
               


               
               282-617, gnl|bosTau2|chr5 (9242411-9242067)
               

               
               282-617, gnl|canFam2|chr15 (27497493-27498071)
               

               
               282-617, gnl|dasNov1|scaffold_93302 (3641-4191)
               

               
               282-617, gnl|echTel1|scaffold_195534 (2740-2228)
               

               
               282-617, gnl|hg17|chr12 (81393503-81394081)
               

               
               282-617, gnl|Hg17|chr12 (81394120-81393769)
               

               
               282-617, gnl|loxAfr1|scaffold_10799 (64300-64842)
               

               
               282-617, gnl|mm7|chr10 (105208738-105208229)
               

               
               282-617, gnl|Mm7|chr10 (105208190-105208483)
               

               
               282-617, gnl|oryCun1|scaffold_108398 (2850-2299)
               

               
               282-617, gnl|panTro1|chr10 (83241603-83242183)
               

               
               282-617, gnl|rheMac2|chr11 (79466274-79466847)
               

               
               282-617, gnl|rn3|chr7 (44413840-44413347)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               149-265, gnl|bosTau2|chr5 (9246778-9246660)
               


               
               282-617, gnl|bosTau2|chr5 (9242411-9242067)
               

               
               282-617, gnl|canFam2|chr15 (27497493-27498071)
               

               
               282-617, gnl|dasNov1|scaffold_93302 (3641-4191)
               

               
               282-617, gnl|echTel1|scaffold_195534 (2740-2228)
               

               
               282-617, gnl|hg17|chr12 (81393503-81394081)
               

               
               282-617, gnl|Hg17|chr12 (81394120-81393769)
               

               
               282-617, gnl|loxAfr1|scaffold_10799 (64300-64842)
               

               
               282-617, gnl|mm7|chr10 (105208738-105208229)
               

               
               282-617, gnl|Mm7|chr10 (105208190-105208483)
               

               
               282-617, gnl|oryCun1|scaffold_108398 (2850-2299)
               

               
               282-617, gnl|panTro1|chr10 (83241603-83242183)
               

               
               282-617, gnl|rheMac2|chr11 (79466274-79466847)
               

               
               282-617, gnl|rn3|chr7 (44413840-44413347)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	149-265, gnl\|bosTau2\|chr5 (9246778-9246660)

	282-617, gnl\|bosTau2\|chr5 (9242411-9242067)
	282-617, gnl\|canFam2\|chr15 (27497493-27498071)
	282-617, gnl\|dasNov1\|scaffold_93302 (3641-4191)
	282-617, gnl\|echTel1\|scaffold_195534 (2740-2228)
	282-617, gnl\|hg17\|chr12 (81393503-81394081)
	282-617, gnl\|Hg17\|chr12 (81394120-81393769)
	282-617, gnl\|loxAfr1\|scaffold_10799 (64300-64842)
	282-617, gnl\|mm7\|chr10 (105208738-105208229)
	282-617, gnl\|Mm7\|chr10 (105208190-105208483)
	282-617, gnl\|oryCun1\|scaffold_108398 (2850-2299)
	282-617, gnl\|panTro1\|chr10 (83241603-83242183)
	282-617, gnl\|rheMac2\|chr11 (79466274-79466847)
	282-617, gnl\|rn3\|chr7 (44413840-44413347)