Non-Coding RNA Search

rmcp26c_b8.y1

Sequence:


               
               GCTCCCGGGCCGCAGCGCGGAGGTGGCCTGGCCGCTGAGCACCCACCGCTGCGGGCGCCC
CGGGCCATGCGGGAGTGCTAGGGCCGCGGGGCAGCATGAAGGGCGGCGACCGCGGGTACA
CCCGAGGTCCCTCTTGGGGGTGGCTCTTTGCGAAGTGCTGCTGTTGTTTCCCATGCAGAG
ATGCCTACTCTCATTCCTCGAGTGAAAATGGAGGCAAGTCCGAGTCGGTGGCCAACCTGC
AGGCCCAGCCCTCCCTGAACTCCATCCACAGTTCACCTGGGCCCAAGCGCTCCACCAACA
CCCTGAAGAAGTGGCTGACCAGTCCTGTGCGCCGGCTCAACAGCGGGAAAGCAGATGGAA
ACATCAAGAAGCAGAAGAAAGTGCGAGATGGTAGGAAGAGCTTCGACCTGGGATCTCCCA
AGCCTGGGGATGAGACGACCCCTCAGGGAGACAGCGCTGATGAGAAGAGCAAGAAAGGTT
GGGGGGAAGATGAGCCAGATGAAGAGTCACACACCCCGCTCCCTCCGCCCATGAAGATCT
TCGACAATGACCCCACGCAGGACGAGATGAGTCTGGAAGGGGGCTCATACCGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCCGGGCCGCAGCGCGGAGGTGGCCTGGCCGCTGAGCACCCACCGCTGCGGGCGCCC
CGGGCCATGCGGGAGTGCTAGGGCCGCGGGGCAGCATGAAGGGCGGCGACCGCGGGTACA
CCCGAGGTCCCTCTTGGGGGTGGCTCTTTGCGAAGTGCTGCTGTTGTTTCCCATGCAGAG
ATGCCTACTCTCATTCCTCGAGTGAAAATGGAGGCAAGTCCGAGTCGGTGGCCAACCTGC
AGGCCCAGCCCTCCCTGAACTCCATCCACAGTTCACCTGGGCCCAAGCGCTCCACCAACA
CCCTGAAGAAGTGGCTGACCAGTCCTGTGCGCCGGCTCAACAGCGGGAAAGCAGATGGAA
ACATCAAGAAGCAGAAGAAAGTGCGAGATGGTAGGAAGAGCTTCGACCTGGGATCTCCCA
AGCCTGGGGATGAGACGACCCCTCAGGGAGACAGCGCTGATGAGAAGAGCAAGAAAGGTT
GGGGGGAAGATGAGCCAGATGAAGAGTCACACACCCCGCTCCCTCCGCCCATGAAGATCT
TCGACAATGACCCCACGCAGGACGAGATGAGTCTGGAAGGGGGCTCATACCGGGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34785972|gb|AAH58015.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34785972|gb|AAH58015.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               347-464, + strand, RNAz p=0.793456

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-464, + strand, RNAz p=0.793456

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               179-464, gnl|bosTau2|chr1 (38540688-38540403)
               

               
               179-464, gnl|Hg17|chr3 (125833955-125834240)
               

               
               179-464, gnl|Mm7|chr16 (33730674-33730389)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-464, gnl|bosTau2|chr1 (38540688-38540403)
               

               
               179-464, gnl|Hg17|chr3 (125833955-125834240)
               

               
               179-464, gnl|Mm7|chr16 (33730674-33730389)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	179-464, gnl\|bosTau2\|chr1 (38540688-38540403)
	179-464, gnl\|Hg17\|chr3 (125833955-125834240)
	179-464, gnl\|Mm7\|chr16 (33730674-33730389)