rmcp28c_o15.y1
|
CTCTTTGAGCACGAGAGGCAGCAGGCCCAGAAGCAGGGCCAGGAGGAGGCCGAGTGCCAC
CGGCAGTTCCGGGCACAGCCCGTGCCTGCGCATGTCTACCTGCCCCTCTACCAGGAGATC
GTGGAGCGCAGCGAGGCGCGCAGGCGGGCAGGGATCCAGAAGAGGAAGGAACTGCTCCTC
TCTTCCTTGAAGCCCTTCAGCTTCCTGGAGAAGGAGGAGCAGCGAAAGAAAGCTGCTCAA
CAGAGGGACTTGGCCGCCGCAGCTAAGGTCAAAGTCCCCAAGCAGAAGGCCACCAAGAGG
ATCCCCAAGTCCATTCTGGAGCCCACCCTCGGGGACAAACTCCAAGAAGCTGAGCTCTTG
AGGAAAATTCGCATCCAGATGAGAGCCCTGGACATGCTGCAGATGGCCTCCTCCCCCATC
CCGTCCTCCAGTAGCCGCCGGGCTGACCCACAGCTTCGCACAGCCACCCGGACCCGGAAG
GAAAAGCTTGGGTTTCTGCAAACTGACTTTGGATTCCAGCCTCGGGTGAATCCTGTCGTC
CCTGACTATGAGGGCCTTTACAAGGCCTTCCAGAAAAGAGCCGCCAAGAGAAGGGACACG
AGGGAGGTGACCCG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCTTTGAGCACGAGAGGCAGCAGGCCCAGAAGCAGGGCCAGGAGGAGGCCGAGTGCCAC
CGGCAGTTCCGGGCACAGCCCGTGCCTGCGCATGTCTACCTGCCCCTCTACCAGGAGATC
GTGGAGCGCAGCGAGGCGCGCAGGCGGGCAGGGATCCAGAAGAGGAAGGAACTGCTCCTC
TCTTCCTTGAAGCCCTTCAGCTTCCTGGAGAAGGAGGAGCAGCGAAAGAAAGCTGCTCAA
CAGAGGGACTTGGCCGCCGCAGCTAAGGTCAAAGTCCCCAAGCAGAAGGCCACCAAGAGG
ATCCCCAAGTCCATTCTGGAGCCCACCCTCGGGGACAAACTCCAAGAAGCTGAGCTCTTG
AGGAAAATTCGCATCCAGATGAGAGCCCTGGACATGCTGCAGATGGCCTCCTCCCCCATC
CCGTCCTCCAGTAGCCGCCGGGCTGACCCACAGCTTCGCACAGCCACCCGGACCCGGAAG
GAAAAGCTTGGGTTTCTGCAAACTGACTTTGGATTCCAGCCTCGGGTGAATCCTGTCGTC
CCTGACTATGAGGGCCTTTACAAGGCCTTCCAGAAAAGAGCCGCCAAGAGAAGGGACACG
AGGGAGGTGACCCG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
63-157, - strand, RNAmicro p=0.954137 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
63-157, - strand, RNAmicro p=0.954137 |
|
191-344, BX281864 NIH_MGC_87 Homo sapiens cDNA clone IMAGp998I1910087 ;
(emb|BX281864.1|), blast E-value=1e-34, identity=87.66% |
|
83-344, PM1-NT0235-281200-007-c07 NT0235 Homo sapiens cDNA, mRNA sequence
(gb|BQ345133.1|), blast E-value=0, identity=88.55% |
|
83-344, PRODG1GID1086F1 Compugen_targeted_mRNA_sequencing Homo sapiens
(gb|BU102010.1|), blast E-value=0, identity=89.69% |
|
83-342, AGENCOURT_27272926 NIH_MGC_212 Homo sapiens cDNA clone (gb|CO403815.1|),
blast E-value=0, identity=89.62% |
|
83-190, LB01816.CR_M11 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE222517.1|),
blast E-value=2e-33, identity=92.59% |
|
83-344, LB03056.CR_M02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE375301.1|),
blast E-value=0, identity=89.93% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
191-344, BX281864 NIH_MGC_87 Homo sapiens cDNA clone IMAGp998I1910087 ;
(emb|BX281864.1|), blast E-value=1e-34, identity=87.66% |
|
83-344, PM1-NT0235-281200-007-c07 NT0235 Homo sapiens cDNA, mRNA sequence
(gb|BQ345133.1|), blast E-value=0, identity=88.55% |
|
83-344, PRODG1GID1086F1 Compugen_targeted_mRNA_sequencing Homo sapiens
(gb|BU102010.1|), blast E-value=0, identity=89.69% |
|
83-342, AGENCOURT_27272926 NIH_MGC_212 Homo sapiens cDNA clone (gb|CO403815.1|),
blast E-value=0, identity=89.62% |
|
83-190, LB01816.CR_M11 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE222517.1|),
blast E-value=2e-33, identity=92.59% |
|
83-344, LB03056.CR_M02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE375301.1|),
blast E-value=0, identity=89.93% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map