Non-Coding RNA Search

rmcp29c_o22.y1

Sequence:


               
               GTAGTGGAACATCTGAATCTAAGAATTCTGATGACCTGAGTATTAAACTCCAGAGTCCCA
ACTCAGATCTATACCAAGATCGTTCTTCTTCTCCACCACCTCCACTGCCAGAAAGAACCT
TAGAGTCCTTCATTGTTGCTGATGAGGATTGTATGCAGGCTAAATCTATAGAGACTTATT
CTACGAGCTGTTCTAATACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTC
CTGGAAAAAGTTTCACAAGGAGTAAGAGTTTGAAAATTTTGCGAAACATGAAAAAGAATG
TCTGTAATTCTTCCCCACCAAACAAGCCTGCAGACCCTGTTCCGTCAAATAACTCCAGTT
CCTTTCTGAATTTTGGTTTTGCAAATCGTTTTTCAAAACCCAAAGGACCAAGGAAACCAC
CATCAACTTGGAATCTTTAACACAACTTTGGAATATAGACTGGAACTGAATATGCAAATA
AAACTACTAGAATACTGCTAGCTAAAATAAATGATCTATATTCATAATATCAACAATGAA
GATATGGAATGTGTTAGTTTTTAAAAGAAAAGCAATATGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGTGGAACATCTGAATCTAAGAATTCTGATGACCTGAGTATTAAACTCCAGAGTCCCA
ACTCAGATCTATACCAAGATCGTTCTTCTTCTCCACCACCTCCACTGCCAGAAAGAACCT
TAGAGTCCTTCATTGTTGCTGATGAGGATTGTATGCAGGCTAAATCTATAGAGACTTATT
CTACGAGCTGTTCTAATACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTC
CTGGAAAAAGTTTCACAAGGAGTAAGAGTTTGAAAATTTTGCGAAACATGAAAAAGAATG
TCTGTAATTCTTCCCCACCAAACAAGCCTGCAGACCCTGTTCCGTCAAATAACTCCAGTT
CCTTTCTGAATTTTGGTTTTGCAAATCGTTTTTCAAAACCCAAAGGACCAAGGAAACCAC
CATCAACTTGGAATCTTTAACACAACTTTGGAATATAGACTGGAACTGAATATGCAAATA
AAACTACTAGAATACTGCTAGCTAAAATAAATGATCTATATTCATAATATCAACAATGAA
GATATGGAATGTGTTAGTTTTTAAAAGAAAAGCAATATGCAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               151-266, - strand, RNAz p=0.566065
               

               
               168-266, - strand, RNAz p=0.987453

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-266, - strand, RNAz p=0.566065
               

               
               168-266, - strand, RNAz p=0.987453

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               151-266, gnl|bosTau2|chr3 (24468886-24469001)
               

               
               151-266, gnl|canFam2|chr17 (54709573-54709816)
               

               
               151-266, gnl|dasNov1|scaffold_26797 (9278-9046)
               

               
               151-266, gnl|hg17|chr1 (114084165-114084393)
               

               
               151-266, gnl|Hg17|chr1 (114084371-114084256)
               

               
               151-266, gnl|loxAfr1|scaffold_6006 (4609-4372)
               

               
               151-266, gnl|mm7|chr3 (103697555-103697334)
               

               
               151-266, gnl|Mm7|chr3 (103697354-103697469)
               

               
               151-266, gnl|monDom2|scaffold_0 (1325195-1324985)
               

               
               151-266, gnl|oryCun1|scaffold_203048 (3793-4021)
               

               
               151-266, gnl|panTro1|chr1 (113871521-113871749)
               

               
               151-266, gnl|rheMac2|chr1 (116815390-116815620)
               

               
               151-266, gnl|rn3|chr2 (199086982-199086763)
               


               
               375-547, gnl|bosTau2|chr3 (24476857-24477026)
               

               
               375-547, gnl|Hg17|chr1 (114069634-114069453)
               

               
               375-547, gnl|Mm7|chr3 (103705959-103706120)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-266, gnl|bosTau2|chr3 (24468886-24469001)
               

               
               151-266, gnl|canFam2|chr17 (54709573-54709816)
               

               
               151-266, gnl|dasNov1|scaffold_26797 (9278-9046)
               

               
               151-266, gnl|hg17|chr1 (114084165-114084393)
               

               
               151-266, gnl|Hg17|chr1 (114084371-114084256)
               

               
               151-266, gnl|loxAfr1|scaffold_6006 (4609-4372)
               

               
               151-266, gnl|mm7|chr3 (103697555-103697334)
               

               
               151-266, gnl|Mm7|chr3 (103697354-103697469)
               

               
               151-266, gnl|monDom2|scaffold_0 (1325195-1324985)
               

               
               151-266, gnl|oryCun1|scaffold_203048 (3793-4021)
               

               
               151-266, gnl|panTro1|chr1 (113871521-113871749)
               

               
               151-266, gnl|rheMac2|chr1 (116815390-116815620)
               

               
               151-266, gnl|rn3|chr2 (199086982-199086763)
               


               
               375-547, gnl|bosTau2|chr3 (24476857-24477026)
               

               
               375-547, gnl|Hg17|chr1 (114069634-114069453)
               

               
               375-547, gnl|Mm7|chr3 (103705959-103706120)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	151-266, - strand, RNAz p=0.566065
	168-266, - strand, RNAz p=0.987453

	151-266, gnl\|bosTau2\|chr3 (24468886-24469001)
	151-266, gnl\|canFam2\|chr17 (54709573-54709816)
	151-266, gnl\|dasNov1\|scaffold_26797 (9278-9046)
	151-266, gnl\|hg17\|chr1 (114084165-114084393)
	151-266, gnl\|Hg17\|chr1 (114084371-114084256)
	151-266, gnl\|loxAfr1\|scaffold_6006 (4609-4372)
	151-266, gnl\|mm7\|chr3 (103697555-103697334)
	151-266, gnl\|Mm7\|chr3 (103697354-103697469)
	151-266, gnl\|monDom2\|scaffold_0 (1325195-1324985)
	151-266, gnl\|oryCun1\|scaffold_203048 (3793-4021)
	151-266, gnl\|panTro1\|chr1 (113871521-113871749)
	151-266, gnl\|rheMac2\|chr1 (116815390-116815620)
	151-266, gnl\|rn3\|chr2 (199086982-199086763)

	375-547, gnl\|bosTau2\|chr3 (24476857-24477026)
	375-547, gnl\|Hg17\|chr1 (114069634-114069453)
	375-547, gnl\|Mm7\|chr3 (103705959-103706120)