Non-Coding RNA Search

rmcp32c_b15.y1

Sequence:


               
               AGGCACGGGTGTATCATGTTTTGAAAGAACACACGGAGGTGAAGGTTTTAATGGGGCCAT
GTGGGGGAGCCAGCCCACAACAGGAGGGGCCTGAGGTGGCCATGATGTCTGCTTCTAACC
TGAATTCATCTGCTCAGCCACAGAATAAACAACCTCTAGGCTGCCCAAGAAAGGCATGGA
CTTCCAGTCCCTGCCCCAGCACCAGATCCAAATCAAGTCTTCAAGTAGGAAAGCCTGGGG
GAGATGGACAAAGTGTTCACCAAACTGGGACCCTTCCCACTTTCAATTCCCTGTCCTCCC
CTTTTTCCCATTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCACGGGTGTATCATGTTTTGAAAGAACACACGGAGGTGAAGGTTTTAATGGGGCCAT
GTGGGGGAGCCAGCCCACAACAGGAGGGGCCTGAGGTGGCCATGATGTCTGCTTCTAACC
TGAATTCATCTGCTCAGCCACAGAATAAACAACCTCTAGGCTGCCCAAGAAAGGCATGGA
CTTCCAGTCCCTGCCCCAGCACCAGATCCAAATCAAGTCTTCAAGTAGGAAAGCCTGGGG
GAGATGGACAAAGTGTTCACCAAACTGGGACCCTTCCCACTTTCAATTCCCTGTCCTCCC
CTTTTTCCCATTCTC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               51-170, - strand, RNAz p=0.849543
               

               
               55-172, - strand, RNAz p=0.62958
               

               
               192-307, - strand, RNAz p=0.76406

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-170, - strand, RNAz p=0.849543
               

               
               55-172, - strand, RNAz p=0.62958
               

               
               192-307, - strand, RNAz p=0.76406

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               12-307, gnl|bosTau2|chr3 (31172507-31172803)
               

               
               12-307, gnl|canFam2|chr6 (45671982-45671697)
               

               
               12-307, gnl|hg17|chr1 (109459169-109459453)
               

               
               12-307, gnl|Hg17|chr1 (109459204-109459629)
               

               
               12-307, gnl|mm7|chr3 (108275801-108275549)
               

               
               12-307, gnl|Mm7|chr3 (108275767-108275480)
               

               
               12-307, gnl|panTro1|chr1 (108382445-108382729)
               

               
               12-307, gnl|rheMac2|chr1 (112253376-112253658)
               

               
               12-307, gnl|rn3|chr2 (203983794-203983537)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-307, gnl|bosTau2|chr3 (31172507-31172803)
               

               
               12-307, gnl|canFam2|chr6 (45671982-45671697)
               

               
               12-307, gnl|hg17|chr1 (109459169-109459453)
               

               
               12-307, gnl|Hg17|chr1 (109459204-109459629)
               

               
               12-307, gnl|mm7|chr3 (108275801-108275549)
               

               
               12-307, gnl|Mm7|chr3 (108275767-108275480)
               

               
               12-307, gnl|panTro1|chr1 (108382445-108382729)
               

               
               12-307, gnl|rheMac2|chr1 (112253376-112253658)
               

               
               12-307, gnl|rn3|chr2 (203983794-203983537)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	51-170, - strand, RNAz p=0.849543
	55-172, - strand, RNAz p=0.62958
	192-307, - strand, RNAz p=0.76406

	12-307, gnl\|bosTau2\|chr3 (31172507-31172803)
	12-307, gnl\|canFam2\|chr6 (45671982-45671697)
	12-307, gnl\|hg17\|chr1 (109459169-109459453)
	12-307, gnl\|Hg17\|chr1 (109459204-109459629)
	12-307, gnl\|mm7\|chr3 (108275801-108275549)
	12-307, gnl\|Mm7\|chr3 (108275767-108275480)
	12-307, gnl\|panTro1\|chr1 (108382445-108382729)
	12-307, gnl\|rheMac2\|chr1 (112253376-112253658)
	12-307, gnl\|rn3\|chr2 (203983794-203983537)