rmcp32c_d6.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTTTCATAGACATATTTTCAGAGTCCAAGGAGGGGCTGGATGTTCACTCGTCAATGAT TCTGCGCTTCCTGCATCGCAATCGGCTCTCGAGCACCGTCGTCCCCTACCCCATGTTGGA CCACTGCAATAACATGTCCACTATGAGGGCTTCTGTTCTGAAGGAGTCTCTGGATCAACT GGTACAAAAAGAAAAGGAGAGCCCTGGAGACCTGACTAGAAGCCCAGAGATGGACAAACT CAAGTCGGTAGCAAAGTGCTACGCTTATATAGAAACATCCTCCAACCCTGCAGACATTGA CAAAATGACAAATGGAGAAACATCATCCTACTGGCAGTCAGATGGCAGTGCTCGCTCACA CTGGATTCGTTTAAAAATGAAGCCAGATGTTGTGCTTAGGCACCTGTCCATTGCAGTGGC TGCCACTGACCAGAGCTACATGCCGCAGCAGGTGACAGTAGCCGTGGGGAGGAGTGCCAG CGAGCTTCAGGAAGTCCGCGACGTGCACATTCCCAGCAATGTCACTGGCTATGTGACACT GCTGGAAAATGCCAACATCAGTCAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTTTCATAGACATATTTTCAGAGTCCAAGGAGGGGCTGGATGTTCACTCGTCAATGAT TCTGCGCTTCCTGCATCGCAATCGGCTCTCGAGCACCGTCGTCCCCTACCCCATGTTGGA CCACTGCAATAACATGTCCACTATGAGGGCTTCTGTTCTGAAGGAGTCTCTGGATCAACT GGTACAAAAAGAAAAGGAGAGCCCTGGAGACCTGACTAGAAGCCCAGAGATGGACAAACT CAAGTCGGTAGCAAAGTGCTACGCTTATATAGAAACATCCTCCAACCCTGCAGACATTGA CAAAATGACAAATGGAGAAACATCATCCTACTGGCAGTCAGATGGCAGTGCTCGCTCACA CTGGATTCGTTTAAAAATGAAGCCAGATGTTGTGCTTAGGCACCTGTCCATTGCAGTGGC TGCCACTGACCAGAGCTACATGCCGCAGCAGGTGACAGTAGCCGTGGGGAGGAGTGCCAG CGAGCTTCAGGAAGTCCGCGACGTGCACATTCCCAGCAATGTCACTGGCTATGTGACACT GCTGGAAAATGCCAACATCAGTCAGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 349-491, + strand, RNAz p=0.96941 | |
| 427-567, - strand, RNAz p=0.992687 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 349-491, + strand, RNAz p=0.96941 | |
| 427-567, - strand, RNAz p=0.992687 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-197, gnl|bosTau2|chr19 (19266746-19266550) | |
| 1-197, gnl|canFam2|chr5 (33208793-33209009) | |
| 1-197, gnl|danRer3|chr5 (26052435-26052633) | |
| 1-197, gnl|echTel1|scaffold_216860 (7771-7978) | |
| 1-197, gnl|galGal2|chr19 (2970713-2970497) | |
| 1-197, gnl|hg17|chr17 (3967001-3967212) | |
| 1-197, gnl|Hg17|chr17 (3967211-3967015) | |
| 1-197, gnl|loxAfr1|scaffold_19193 (11414-11624) | |
| 1-197, gnl|mm7|chr11 (72903538-72903328) | |
| 1-197, gnl|Mm7|chr11 (72903327-72903523) | |
| 1-197, gnl|monDom2|scaffold_310 (86536-86325) | |
| 1-197, gnl|panTro1|chr19 (4269761-4269972) | |
| 1-197, gnl|rheMac2|chr16 (3845192-3845402) | |
| 1-197, gnl|rn3|chr10 (59733166-59732956) | |
| 1-197, gnl|tetNig1|chr7 (2051182-2051380) | |
| 1-197, gnl|xenTro1|scaffold_21 (2304150-2304350) | |
| 349-567, gnl|bosTau2|chr19 (19263378-19263158) | |
| 349-567, gnl|canFam2|chr5 (33205804-33206017) | |
| 349-567, gnl|danRer3|chr5 (26050211-26050424) | |
| 349-567, gnl|echTel1|scaffold_298942 (2587-2800) | |
| 349-567, gnl|galGal2|chr19 (2972299-2972086) | |
| 349-567, gnl|hg17|chr17 (3962645-3962858) | |
| 349-567, gnl|Hg17|chr17 (3962870-3962654) | |
| 349-567, gnl|loxAfr1|scaffold_19193 (8710-8923) | |
| 349-567, gnl|mm7|chr11 (72905857-72905644) | |
| 349-567, gnl|Mm7|chr11 (72905634-72905846) | |
| 349-567, gnl|monDom2|scaffold_310 (87056-86847) | |
| 349-567, gnl|oryCun1|scaffold_213803 (41009-41222) | |
| 349-567, gnl|panTro1|chr19_random (19319144-19318931) | |
| 349-567, gnl|rheMac2|chr16 (3840791-3841004) | |
| 349-567, gnl|rn3|chr10 (59735430-59735217) | |
| 349-567, gnl|tetNig1|chr7 (2050571-2050784) | |
| 349-567, gnl|xenTro1|scaffold_21 (2300938-2301151) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-197, gnl|bosTau2|chr19 (19266746-19266550) | |
| 1-197, gnl|canFam2|chr5 (33208793-33209009) | |
| 1-197, gnl|danRer3|chr5 (26052435-26052633) | |
| 1-197, gnl|echTel1|scaffold_216860 (7771-7978) | |
| 1-197, gnl|galGal2|chr19 (2970713-2970497) | |
| 1-197, gnl|hg17|chr17 (3967001-3967212) | |
| 1-197, gnl|Hg17|chr17 (3967211-3967015) | |
| 1-197, gnl|loxAfr1|scaffold_19193 (11414-11624) | |
| 1-197, gnl|mm7|chr11 (72903538-72903328) | |
| 1-197, gnl|Mm7|chr11 (72903327-72903523) | |
| 1-197, gnl|monDom2|scaffold_310 (86536-86325) | |
| 1-197, gnl|panTro1|chr19 (4269761-4269972) | |
| 1-197, gnl|rheMac2|chr16 (3845192-3845402) | |
| 1-197, gnl|rn3|chr10 (59733166-59732956) | |
| 1-197, gnl|tetNig1|chr7 (2051182-2051380) | |
| 1-197, gnl|xenTro1|scaffold_21 (2304150-2304350) | |
| 349-567, gnl|bosTau2|chr19 (19263378-19263158) | |
| 349-567, gnl|canFam2|chr5 (33205804-33206017) | |
| 349-567, gnl|danRer3|chr5 (26050211-26050424) | |
| 349-567, gnl|echTel1|scaffold_298942 (2587-2800) | |
| 349-567, gnl|galGal2|chr19 (2972299-2972086) | |
| 349-567, gnl|hg17|chr17 (3962645-3962858) | |
| 349-567, gnl|Hg17|chr17 (3962870-3962654) | |
| 349-567, gnl|loxAfr1|scaffold_19193 (8710-8923) | |
| 349-567, gnl|mm7|chr11 (72905857-72905644) | |
| 349-567, gnl|Mm7|chr11 (72905634-72905846) | |
| 349-567, gnl|monDom2|scaffold_310 (87056-86847) | |
| 349-567, gnl|oryCun1|scaffold_213803 (41009-41222) | |
| 349-567, gnl|panTro1|chr19_random (19319144-19318931) | |
| 349-567, gnl|rheMac2|chr16 (3840791-3841004) | |
| 349-567, gnl|rn3|chr10 (59735430-59735217) | |
| 349-567, gnl|tetNig1|chr7 (2050571-2050784) | |
| 349-567, gnl|xenTro1|scaffold_21 (2300938-2301151) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) |