Non-Coding RNA Search

rmcp33c_b9.y1

Sequence:


               
               CGCCTCAAACTGCCTCGGGCGTCAAAGCGCCCAGACGTTCGCTGCCGGCCCCCGAGGGCG
CGTTTCCCCAGGTCTTCAGCTTCCTTTCTTCGCGGTTGACAACGAAATCCCCGGGGCACA
TTGCTCCTTCGGGCCTTTGGGCCCGAGGGCAGGCCCCGCGGGTCGGGTCCGGGGCGGTGC
GGTGGGCCCGCGGGGGCACCGGGCGCAGCGCGGCGGCTGCAGTCAGTTCGCAGGAGCGGG
GTTTCGTACTAACCGGGTCTGCGTTTCTCTGTCCCAGGATCGCCACGACGCGAGCAGCAA
TGGGAACCCGCGTCTCCCTCACCTCTCTTCCGCCGGGCAGCATCTCTACAGCCCCGCGCC
TCCCCTTTCCCATACTGGAGTCGCCGAATACCAGCCACCGCCCTACTTTCCGCCTCCCTA
CCAGCAGCTGGCTTACTCGCAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCTCAAACTGCCTCGGGCGTCAAAGCGCCCAGACGTTCGCTGCCGGCCCCCGAGGGCG
CGTTTCCCCAGGTCTTCAGCTTCCTTTCTTCGCGGTTGACAACGAAATCCCCGGGGCACA
TTGCTCCTTCGGGCCTTTGGGCCCGAGGGCAGGCCCCGCGGGTCGGGTCCGGGGCGGTGC
GGTGGGCCCGCGGGGGCACCGGGCGCAGCGCGGCGGCTGCAGTCAGTTCGCAGGAGCGGG
GTTTCGTACTAACCGGGTCTGCGTTTCTCTGTCCCAGGATCGCCACGACGCGAGCAGCAA
TGGGAACCCGCGTCTCCCTCACCTCTCTTCCGCCGGGCAGCATCTCTACAGCCCCGCGCC
TCCCCTTTCCCATACTGGAGTCGCCGAATACCAGCCACCGCCCTACTTTCCGCCTCCCTA
CCAGCAGCTGGCTTACTCGCAGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               37-138, - strand, RNAz p=0.727548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-138, - strand, RNAz p=0.727548

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               128-184, + strand, RNAmicro p=0.960341

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               128-184, + strand, RNAmicro p=0.960341

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-444, gnl|bosTau2|chr13 (40773131-40772675)
               

               
               1-444, gnl|Hg17|chr20 (54639378-54639834)
               

               
               1-444, gnl|Mm7|chr2 (172343814-172344227)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-444, gnl|bosTau2|chr13 (40773131-40772675)
               

               
               1-444, gnl|Hg17|chr20 (54639378-54639834)
               

               
               1-444, gnl|Mm7|chr2 (172343814-172344227)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	1-444, gnl\|bosTau2\|chr13 (40773131-40772675)
	1-444, gnl\|Hg17\|chr20 (54639378-54639834)
	1-444, gnl\|Mm7\|chr2 (172343814-172344227)