Non-Coding RNA Search

rmcp33c_d7.y1

Sequence:


               
               CAAAGCCTAAGAGATTAAAATACTACTGAATACCTTCCCCAATCCCCTCTTTTATGTTAT
TAAAAATAATGGGGGAATTCTCACTGTGGCACTGTAAGTTaggatccagtgttgccccag
ctgtggtgtaggttgcagctgtggctcggattcgatccctgtccagggaacCGCCCTGGC
CAGGGAACTTCCCTGTGCCTCGGGTTGGGGGAGGAATTGGAACTCTATGTACTGTTATGC
CTGCATCCATTAATGGAAGAGAAGTTTTAGAATGAGGCCTGTTCAATGAATATACCAGTT
ATGTAAGTGAGTTTAAAAAATCTTGATTAAGTCAAAATCATCCTTTTATGGACAAATGCA
AGACACTTTATGTTTAGGGTGGTGGTCCAGAAGAGTCAAGTCTAGAGGAAGTGTGTTTTC
CTCAACGCTCACAGCTAACACTTCTCACTCTCTGTCCATTCATATGGAAAATGATGAGTA
GTGACTGATGAGGCACAAGTCAGCCAAACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGCCTAAGAGATTAAAATACTACTGAATACCTTCCCCAATCCCCTCTTTTATGTTAT
TAAAAATAATGGGGGAATTCTCACTGTGGCACTGTAAGTTaggatccagtgttgccccag
ctgtggtgtaggttgcagctgtggctcggattcgatccctgtccagggaacCGCCCTGGC
CAGGGAACTTCCCTGTGCCTCGGGTTGGGGGAGGAATTGGAACTCTATGTACTGTTATGC
CTGCATCCATTAATGGAAGAGAAGTTTTAGAATGAGGCCTGTTCAATGAATATACCAGTT
ATGTAAGTGAGTTTAAAAAATCTTGATTAAGTCAAAATCATCCTTTTATGGACAAATGCA
AGACACTTTATGTTTAGGGTGGTGGTCCAGAAGAGTCAAGTCTAGAGGAAGTGTGTTTTC
CTCAACGCTCACAGCTAACACTTCTCACTCTCTGTCCATTCATATGGAAAATGATGAGTA
GTGACTGATGAGGCACAAGTCAGCCAAACTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               394-512, - strand, RNAz p=0.828576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-512, - strand, RNAz p=0.828576

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               228-512, gnl|bosTau2|chr9 (43316588-43316866)
               

               
               228-512, gnl|Hg17|chr6 (135342452-135342164)
               

               
               228-512, gnl|Mm7|chr10 (21084057-21084308)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               228-512, gnl|bosTau2|chr9 (43316588-43316866)
               

               
               228-512, gnl|Hg17|chr6 (135342452-135342164)
               

               
               228-512, gnl|Mm7|chr10 (21084057-21084308)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	228-512, gnl\|bosTau2\|chr9 (43316588-43316866)
	228-512, gnl\|Hg17\|chr6 (135342452-135342164)
	228-512, gnl\|Mm7\|chr10 (21084057-21084308)