Non-Coding RNA Search

rmcp33c_e4.y1

Sequence:


               
               AATAAATACTATCATGGCAAAAATCTCAAGGTTAAAAAAAAAAAATCGGCTTTAACTATT
AGCCCAGGTTTTTAAAGTATGAAACAGTTTCCATATGGAGAGCAGGCTTTTAGAATTGGT
CGTAGTGAAATCTAATTCTAAATCTAACATTGGATGATTTTCTGATAATAAGACATTTAT
AACAACATTTGGAAGTATAGAAATTTAATGACTAAAACCTTTCTGAGTCCCGAGGCTGCA
TTTTTCTTAAAACTCTTTACCCGCAGGCAGGGTTCAGTTCCCACCCTGACAGAAGTAGGT
GAATGGGGCGTCTCCTCATGTTCTCTAGGTTTTAACAGTGGTGCCAGTGGCATCAGAAGT
GTCTGTGTGTTGCCTCTCTCAGTCCTAGCTCGCAGAAACAGACGTTTTCTAAAGTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAATACTATCATGGCAAAAATCTCAAGGTTAAAAAAAAAAAATCGGCTTTAACTATT
AGCCCAGGTTTTTAAAGTATGAAACAGTTTCCATATGGAGAGCAGGCTTTTAGAATTGGT
CGTAGTGAAATCTAATTCTAAATCTAACATTGGATGATTTTCTGATAATAAGACATTTAT
AACAACATTTGGAAGTATAGAAATTTAATGACTAAAACCTTTCTGAGTCCCGAGGCTGCA
TTTTTCTTAAAACTCTTTACCCGCAGGCAGGGTTCAGTTCCCACCCTGACAGAAGTAGGT
GAATGGGGCGTCTCCTCATGTTCTCTAGGTTTTAACAGTGGTGCCAGTGGCATCAGAAGT
GTCTGTGTGTTGCCTCTCTCAGTCCTAGCTCGCAGAAACAGACGTTTTCTAAAGTTGCA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-419, gnl|bosTau2|chr11 (60137098-60136687)
               

               
               1-419, gnl|canFam2|chr17 (17944887-17945244)
               

               
               1-419, gnl|dasNov1|scaffold_86485 (4127-4449)
               

               
               1-419, gnl|echTel1|scaffold_310170 (88909-88546)
               

               
               1-419, gnl|hg17|chr2 (20020540-20020934)
               

               
               1-419, gnl|Hg17|chr2 (20020990-20020559)
               

               
               1-419, gnl|loxAfr1|scaffold_2601 (66385-66758)
               

               
               1-419, gnl|mm7|chr12 (9060040-9059696)
               

               
               1-419, gnl|oryCun1|scaffold_203973 (6070-5708)
               

               
               1-419, gnl|panTro1|chr12 (20846142-20846536)
               

               
               1-419, gnl|rheMac2|chr13 (19807394-19807793)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-419, gnl|bosTau2|chr11 (60137098-60136687)
               

               
               1-419, gnl|canFam2|chr17 (17944887-17945244)
               

               
               1-419, gnl|dasNov1|scaffold_86485 (4127-4449)
               

               
               1-419, gnl|echTel1|scaffold_310170 (88909-88546)
               

               
               1-419, gnl|hg17|chr2 (20020540-20020934)
               

               
               1-419, gnl|Hg17|chr2 (20020990-20020559)
               

               
               1-419, gnl|loxAfr1|scaffold_2601 (66385-66758)
               

               
               1-419, gnl|mm7|chr12 (9060040-9059696)
               

               
               1-419, gnl|oryCun1|scaffold_203973 (6070-5708)
               

               
               1-419, gnl|panTro1|chr12 (20846142-20846536)
               

               
               1-419, gnl|rheMac2|chr13 (19807394-19807793)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	1-419, gnl\|bosTau2\|chr11 (60137098-60136687)
	1-419, gnl\|canFam2\|chr17 (17944887-17945244)
	1-419, gnl\|dasNov1\|scaffold_86485 (4127-4449)
	1-419, gnl\|echTel1\|scaffold_310170 (88909-88546)
	1-419, gnl\|hg17\|chr2 (20020540-20020934)
	1-419, gnl\|Hg17\|chr2 (20020990-20020559)
	1-419, gnl\|loxAfr1\|scaffold_2601 (66385-66758)
	1-419, gnl\|mm7\|chr12 (9060040-9059696)
	1-419, gnl\|oryCun1\|scaffold_203973 (6070-5708)
	1-419, gnl\|panTro1\|chr12 (20846142-20846536)
	1-419, gnl\|rheMac2\|chr13 (19807394-19807793)