Non-Coding RNA Search

rmcp34c_a19.y1

Sequence:


               
               TCTTTAACCATCTGGGCCTCAAGGGAACTCCTCGGCTTTTCTTTATTGGATATAGATATA
TCTTTATTCTTATTACAAGTGAAAATAAGTGCACATTATAAAATTATATAATTTGCAATT
CACTGCAAATCAAATCAAAACAAATTATACCAAAAAGCTAAGACTATATCAAGATTCAGC
AGAGAGGGGTATGTATTAATGAATAATTTAATGCCTATAAAGCAAAATCATGGTCTAACC
TTGCAATTAGGTTTGGATATGTAGAAGTTAAAGGCACAGAAAATCAAAGGCAAATTATAT
GAAGTGCCTTTTCATTCACAACTGAAATAATCGCCATGTTGAAAAGGAATGTGGTAAATT
TAAGAAGAAGTTAATGGTCCCTTTCATTTTTTATCTTGTCCCACTATGTAACCTTGAACA
AGTCAGATAACATCTCTGTTTTTCCATCTGTAAAACAGGCCTGCTCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTAACCATCTGGGCCTCAAGGGAACTCCTCGGCTTTTCTTTATTGGATATAGATATA
TCTTTATTCTTATTACAAGTGAAAATAAGTGCACATTATAAAATTATATAATTTGCAATT
CACTGCAAATCAAATCAAAACAAATTATACCAAAAAGCTAAGACTATATCAAGATTCAGC
AGAGAGGGGTATGTATTAATGAATAATTTAATGCCTATAAAGCAAAATCATGGTCTAACC
TTGCAATTAGGTTTGGATATGTAGAAGTTAAAGGCACAGAAAATCAAAGGCAAATTATAT
GAAGTGCCTTTTCATTCACAACTGAAATAATCGCCATGTTGAAAAGGAATGTGGTAAATT
TAAGAAGAAGTTAATGGTCCCTTTCATTTTTTATCTTGTCCCACTATGTAACCTTGAACA
AGTCAGATAACATCTCTGTTTTTCCATCTGTAAAACAGGCCTGCTCAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               195-310, - strand, RNAz p=0.841979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-310, - strand, RNAz p=0.841979

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               32-465, gnl|bosTau2|chr29 (22830190-22829776)
               

               
               32-465, gnl|Hg17|chr11 (128658782-128659281)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-465, gnl|bosTau2|chr29 (22830190-22829776)
               

               
               32-465, gnl|Hg17|chr11 (128658782-128659281)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	32-465, gnl\|bosTau2\|chr29 (22830190-22829776)
	32-465, gnl\|Hg17\|chr11 (128658782-128659281)