Non-Coding RNA Search

rmcp34c_b1.y1

Sequence:


               
               CAAAGAGCCAACTCAGAACAAGCCAGATCTTCATCTTTTCCAGTGTGATGAGATTAAGGC
AAACCTAATTAGTGAAGATATTGAAAGTGCAATCAGCGACAGTAAAGGAGGCAAACAGAA
GCGACGGCCTGATGTCCTGAGGATGATTTCCAAAGCAGACCCTGGCATACCACCTCCACC
CAGAGCCCCCGCCCCTGTGCCCCCTGGGACTGTGACCCAAGTGGATGTTCGAAGTCGGGT
GGCAGCCTGGTCTGCACTGGCAGCTGACCAAGGGGACTTTGAGAAACAAAGGCATTATTA
TGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGCAAATTTT
AAACCACATTTGGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCGGCTGAAGC
ATTTTCTGAGCTTTCTAAAAGGAAGAAAGCTAAGAAGGGTAAAAAGAAAGGACCAGGAGA
GGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGAGCCAACTCAGAACAAGCCAGATCTTCATCTTTTCCAGTGTGATGAGATTAAGGC
AAACCTAATTAGTGAAGATATTGAAAGTGCAATCAGCGACAGTAAAGGAGGCAAACAGAA
GCGACGGCCTGATGTCCTGAGGATGATTTCCAAAGCAGACCCTGGCATACCACCTCCACC
CAGAGCCCCCGCCCCTGTGCCCCCTGGGACTGTGACCCAAGTGGATGTTCGAAGTCGGGT
GGCAGCCTGGTCTGCACTGGCAGCTGACCAAGGGGACTTTGAGAAACAAAGGCATTATTA
TGAGCAGGAAGAAACACCTGAGATGATGGCAGCCCGCATTGACAGAGATGTGCAAATTTT
AAACCACATTTGGGATGACATTGAATTTTTTATCACAAAACTCCAAAAAGCGGCTGAAGC
ATTTTCTGAGCTTTCTAAAAGGAAGAAAGCTAAGAAGGGTAAAAAGAAAGGACCAGGAGA
GGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839175|ref|XP_583702.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839175|ref|XP_583702.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               352-479, - strand, RNAz p=0.98682

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-479, - strand, RNAz p=0.98682

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               133-283, gnl|bosTau2|chrX (32160529-32160679)
               

               
               133-283, gnl|canFam2|chr27 (34041219-34041042)
               

               
               133-283, gnl|danRer3|chrNA (2055165-2055339)
               

               
               133-283, gnl|echTel1|scaffold_320360 (75718-75541)
               

               
               133-283, gnl|galGal2|chr1 (59591589-59591772)
               

               
               133-283, gnl|hg17|chr12 (15709952-15710130)
               

               
               133-283, gnl|Hg17|chr12 (15710101-15709952)
               

               
               133-283, gnl|loxAfr1|scaffold_2888 (116813-116636)
               

               
               133-283, gnl|mm7|chr6 (137566903-137567087)
               

               
               133-283, gnl|Mm7|chr6 (137567052-137566903)
               

               
               133-283, gnl|monDom2|scaffold_31 (10311923-10311753)
               

               
               133-283, gnl|oryCun1|scaffold_204026 (48857-48677)
               

               
               133-283, gnl|panTro1|chrUn_random (41978695-41978873)
               

               
               133-283, gnl|rheMac2|chr11 (16060733-16060911)
               

               
               133-283, gnl|rn3|chr4 (174891717-174891901)
               

               
               133-283, gnl|xenTro1|scaffold_1243 (151159-151317)
               


               
               352-479, gnl|bosTau2|chrX (32165482-32165609)
               

               
               352-479, gnl|Hg17|chr12 (15704942-15704815)
               

               
               352-479, gnl|Mm7|chr6 (137561953-137561826)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-283, gnl|bosTau2|chrX (32160529-32160679)
               

               
               133-283, gnl|canFam2|chr27 (34041219-34041042)
               

               
               133-283, gnl|danRer3|chrNA (2055165-2055339)
               

               
               133-283, gnl|echTel1|scaffold_320360 (75718-75541)
               

               
               133-283, gnl|galGal2|chr1 (59591589-59591772)
               

               
               133-283, gnl|hg17|chr12 (15709952-15710130)
               

               
               133-283, gnl|Hg17|chr12 (15710101-15709952)
               

               
               133-283, gnl|loxAfr1|scaffold_2888 (116813-116636)
               

               
               133-283, gnl|mm7|chr6 (137566903-137567087)
               

               
               133-283, gnl|Mm7|chr6 (137567052-137566903)
               

               
               133-283, gnl|monDom2|scaffold_31 (10311923-10311753)
               

               
               133-283, gnl|oryCun1|scaffold_204026 (48857-48677)
               

               
               133-283, gnl|panTro1|chrUn_random (41978695-41978873)
               

               
               133-283, gnl|rheMac2|chr11 (16060733-16060911)
               

               
               133-283, gnl|rn3|chr4 (174891717-174891901)
               

               
               133-283, gnl|xenTro1|scaffold_1243 (151159-151317)
               


               
               352-479, gnl|bosTau2|chrX (32165482-32165609)
               

               
               352-479, gnl|Hg17|chr12 (15704942-15704815)
               

               
               352-479, gnl|Mm7|chr6 (137561953-137561826)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	133-283, gnl\|bosTau2\|chrX (32160529-32160679)
	133-283, gnl\|canFam2\|chr27 (34041219-34041042)
	133-283, gnl\|danRer3\|chrNA (2055165-2055339)
	133-283, gnl\|echTel1\|scaffold_320360 (75718-75541)
	133-283, gnl\|galGal2\|chr1 (59591589-59591772)
	133-283, gnl\|hg17\|chr12 (15709952-15710130)
	133-283, gnl\|Hg17\|chr12 (15710101-15709952)
	133-283, gnl\|loxAfr1\|scaffold_2888 (116813-116636)
	133-283, gnl\|mm7\|chr6 (137566903-137567087)
	133-283, gnl\|Mm7\|chr6 (137567052-137566903)
	133-283, gnl\|monDom2\|scaffold_31 (10311923-10311753)
	133-283, gnl\|oryCun1\|scaffold_204026 (48857-48677)
	133-283, gnl\|panTro1\|chrUn_random (41978695-41978873)
	133-283, gnl\|rheMac2\|chr11 (16060733-16060911)
	133-283, gnl\|rn3\|chr4 (174891717-174891901)
	133-283, gnl\|xenTro1\|scaffold_1243 (151159-151317)

	352-479, gnl\|bosTau2\|chrX (32165482-32165609)
	352-479, gnl\|Hg17\|chr12 (15704942-15704815)
	352-479, gnl\|Mm7\|chr6 (137561953-137561826)