rmed02c_c9.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACTTTGGGGATAAGTGACCTCAATTCCCGACTCGGAAAGCAATCTGGATCAGAACTGT TTGTCTCGCTGCAGCACAGAGATTTTCTCTGAAGCCAGCTGGGAGCAGGTGGATAAACAG GACACGGAGATGACTCGATGGCTCCCTGACCACCTGGCTGCCCACTGCTATGCGTGTGAT AGTGCCTTCTGGCTTGCCAGTAGGAAGCACCACTGCAGGAATTGTGGGAATGTATTCTGC TCCAGTTGTTGTAACCAGAAGGTTCCAGTTCCCAGCCAACAGCTCTTTGAACCTAGTCGC GTGTGCAAGTCTTGCTATAGCAGCCTGCATCCCACAAGCTCCAGCATTGACCTTGAACTG GATAAGCCCATTGCTGCCACTTCAAACTGAAGCTTAGTGACCTGGGGTGGGCAGAGGCCA AGCTACTCTTCCTCTGACAGGCCCACAAAGCCTGGGCAGACCAAGAAGCCCGTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACTTTGGGGATAAGTGACCTCAATTCCCGACTCGGAAAGCAATCTGGATCAGAACTGT TTGTCTCGCTGCAGCACAGAGATTTTCTCTGAAGCCAGCTGGGAGCAGGTGGATAAACAG GACACGGAGATGACTCGATGGCTCCCTGACCACCTGGCTGCCCACTGCTATGCGTGTGAT AGTGCCTTCTGGCTTGCCAGTAGGAAGCACCACTGCAGGAATTGTGGGAATGTATTCTGC TCCAGTTGTTGTAACCAGAAGGTTCCAGTTCCCAGCCAACAGCTCTTTGAACCTAGTCGC GTGTGCAAGTCTTGCTATAGCAGCCTGCATCCCACAAGCTCCAGCATTGACCTTGAACTG GATAAGCCCATTGCTGCCACTTCAAACTGAAGCTTAGTGACCTGGGGTGGGCAGAGGCCA AGCTACTCTTCCTCTGACAGGCCCACAAAGCCTGGGCAGACCAAGAAGCCCGTGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 18-129, - strand, RNAz p=0.596629 | |
| 40-129, - strand, RNAz p=0.752515 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 18-129, - strand, RNAz p=0.596629 | |
| 40-129, - strand, RNAz p=0.752515 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 18-129, gnl|bosTau2|chr17 (42239147-42239258) | |
| 18-129, gnl|canFam2|chr26 (26212118-26212275) | |
| 18-129, gnl|danRer3|chr25 (3659917-3660093) | |
| 18-129, gnl|dasNov1|scaffold_4266 (22016-21859) | |
| 18-129, gnl|echTel1|scaffold_322896 (58492-58335) | |
| 18-129, gnl|fr1|chrUn (56556522-56556649) | |
| 18-129, gnl|galGal2|chr15 (10804334-10804184) | |
| 18-129, gnl|hg17|chr22 (28742551-28742708) | |
| 18-129, gnl|Hg17|chr22 (28742571-28742682) | |
| 18-129, gnl|loxAfr1|scaffold_13864 (7743-7586) | |
| 18-129, gnl|mm7|chr11 (4438015-4437858) | |
| 18-129, gnl|Mm7|chr11 (4437993-4437882) | |
| 18-129, gnl|monDom2|scaffold_89 (3932496-3932652) | |
| 18-129, gnl|oryCun1|scaffold_203374 (29739-29582) | |
| 18-129, gnl|panTro1|chr23 (28842201-28842358) | |
| 18-129, gnl|rheMac2|chr10 (73878495-73878652) | |
| 18-129, gnl|rn3|chr14 (85122491-85122334) | |
| 18-129, gnl|tetNig1|chr12 (11704338-11704476) | |
| 18-129, gnl|xenTro1|scaffold_207 (712547-712700) | |
| 217-474, gnl|bosTau2|chr17 (42242357-42242609) | |
| 217-474, gnl|Hg17|chr22 (28746171-28746427) | |
| 217-474, gnl|Mm7|chr11 (4434944-4434686) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-129, gnl|bosTau2|chr17 (42239147-42239258) | |
| 18-129, gnl|canFam2|chr26 (26212118-26212275) | |
| 18-129, gnl|danRer3|chr25 (3659917-3660093) | |
| 18-129, gnl|dasNov1|scaffold_4266 (22016-21859) | |
| 18-129, gnl|echTel1|scaffold_322896 (58492-58335) | |
| 18-129, gnl|fr1|chrUn (56556522-56556649) | |
| 18-129, gnl|galGal2|chr15 (10804334-10804184) | |
| 18-129, gnl|hg17|chr22 (28742551-28742708) | |
| 18-129, gnl|Hg17|chr22 (28742571-28742682) | |
| 18-129, gnl|loxAfr1|scaffold_13864 (7743-7586) | |
| 18-129, gnl|mm7|chr11 (4438015-4437858) | |
| 18-129, gnl|Mm7|chr11 (4437993-4437882) | |
| 18-129, gnl|monDom2|scaffold_89 (3932496-3932652) | |
| 18-129, gnl|oryCun1|scaffold_203374 (29739-29582) | |
| 18-129, gnl|panTro1|chr23 (28842201-28842358) | |
| 18-129, gnl|rheMac2|chr10 (73878495-73878652) | |
| 18-129, gnl|rn3|chr14 (85122491-85122334) | |
| 18-129, gnl|tetNig1|chr12 (11704338-11704476) | |
| 18-129, gnl|xenTro1|scaffold_207 (712547-712700) | |
| 217-474, gnl|bosTau2|chr17 (42242357-42242609) | |
| 217-474, gnl|Hg17|chr22 (28746171-28746427) | |
| 217-474, gnl|Mm7|chr11 (4434944-4434686) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |