Non-Coding RNA Search

rmed11c_m19.y1

Sequence:


               
               CAGAGGCACCCTGGCTCGGGGGACAGCCGCTGTGGCCGGGCGAGGGCTTGGGGCTTACTG
AGCAGTGGGTTGCAGGAGGAGGAGCTGGGCAGGCCCTGCACAAGGGAGGAGTGGAAGACG
AGGTAGCCCAGCAGCAGGGTCACCTTGTAGGCAATGCGCTCGGTCCTGAGGGGCAGCAGC
CCCCCGCACAGGTCAGCCAGCAGCAGCGCCTCCCCGGGCACCAGTAGCGCTATGATGGTC
TTGAGCGCCGTGTTCTCCAGGCGCAACTGGAAGGAAGGAAGTCAGGGCTTTCCTGGGGGG
TGCGTGGGGGCGGGCGGGAGAAGGGTGGTGTCGTGGGGCGTCTCGGTGCCCCCCTCGGCC
GTGGGGCAGCCACCTCCTGACTCACCGTCACCTGGAAGCAGGGCACCAGCTGCCAGGGTG
GGACCTGGGCTCTCAAATCCCGAACCACATATTCCCGCTTGACACTCACAATCTCGTTCA
CCGCCAGGACCCGGAACTCCAGCTCCATCACTGAAGGGGCGTGAGGGGCGGGGCGGAGGT
GAGAGCCGTGAACTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGCACCCTGGCTCGGGGGACAGCCGCTGTGGCCGGGCGAGGGCTTGGGGCTTACTG
AGCAGTGGGTTGCAGGAGGAGGAGCTGGGCAGGCCCTGCACAAGGGAGGAGTGGAAGACG
AGGTAGCCCAGCAGCAGGGTCACCTTGTAGGCAATGCGCTCGGTCCTGAGGGGCAGCAGC
CCCCCGCACAGGTCAGCCAGCAGCAGCGCCTCCCCGGGCACCAGTAGCGCTATGATGGTC
TTGAGCGCCGTGTTCTCCAGGCGCAACTGGAAGGAAGGAAGTCAGGGCTTTCCTGGGGGG
TGCGTGGGGGCGGGCGGGAGAAGGGTGGTGTCGTGGGGCGTCTCGGTGCCCCCCTCGGCC
GTGGGGCAGCCACCTCCTGACTCACCGTCACCTGGAAGCAGGGCACCAGCTGCCAGGGTG
GGACCTGGGCTCTCAAATCCCGAACCACATATTCCCGCTTGACACTCACAATCTCGTTCA
CCGCCAGGACCCGGAACTCCAGCTCCATCACTGAAGGGGCGTGAGGGGCGGGGCGGAGGT
GAGAGCCGTGAACTAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96BU6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96BU6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               344-444, - strand, RNAz p=0.875933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               344-444, - strand, RNAz p=0.875933

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK122638, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK122638, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               40-519, gnl|bosTau2|chr19 (49507972-49508444)
               

               
               40-519, gnl|Hg17|chr17 (71589444-71588946)
               

               
               40-519, gnl|Mm7|chr11 (116396593-116395538)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-519, gnl|bosTau2|chr19 (49507972-49508444)
               

               
               40-519, gnl|Hg17|chr17 (71589444-71588946)
               

               
               40-519, gnl|Mm7|chr11 (116396593-116395538)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	40-519, gnl\|bosTau2\|chr19 (49507972-49508444)
	40-519, gnl\|Hg17\|chr17 (71589444-71588946)
	40-519, gnl\|Mm7\|chr11 (116396593-116395538)