Non-Coding RNA Search

rmed13c_f23.y1

Sequence:


               
               AAAAAATATCACACCCTTATACCAACCTCAGAGGGTGAAATTCTGGAACCCGTTCTCCCT
GCTGTTCAAATGCCAGTAAGGACTTTGCAGTCTGCACTAGAAGCCCTCACAATTCTTCCT
TCCGATCAAGTTTTACCTGTGTTCCCTTGCATGAAGATTTTGGTTCCCAAGCTTCTGACC
TCCTGTGAATCACTCTGCATAGAGTCTTTTGACATGGCCTGGAAAATCATAGCTTCTTTA
AGCAACACTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATATCACACCCTTATACCAACCTCAGAGGGTGAAATTCTGGAACCCGTTCTCCCT
GCTGTTCAAATGCCAGTAAGGACTTTGCAGTCTGCACTAGAAGCCCTCACAATTCTTCCT
TCCGATCAAGTTTTACCTGTGTTCCCTTGCATGAAGATTTTGGTTCCCAAGCTTCTGACC
TCCTGTGAATCACTCTGCATAGAGTCTTTTGACATGGCCTGGAAAATCATAGCTTCTTTA
AGCAACACTCA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               3-171, gnl|bosTau2|chr28 (3576243-3576411)
               

               
               3-171, gnl|canFam2|chr4 (8403187-8402783)
               

               
               3-171, gnl|dasNov1|scaffold_8055 (76561-76976)
               

               
               3-171, gnl|echTel1|scaffold_231514 (18102-18514)
               

               
               3-171, gnl|galGal2|chr3 (34509907-34509518)
               

               
               3-171, gnl|hg17|chr1 (230871681-230872083)
               

               
               3-171, gnl|Hg17|chr1 (230872065-230871897)
               

               
               3-171, gnl|mm7|chr8 (125034708-125035111)
               

               
               3-171, gnl|Mm7|chr8 (125035093-125034925)
               

               
               3-171, gnl|monDom2|scaffold_13 (51882388-51881982)
               

               
               3-171, gnl|oryCun1|scaffold_169060 (7271-7702)
               

               
               3-171, gnl|panTro1|chr1 (214747250-214747654)
               

               
               3-171, gnl|rheMac2|chr1 (222593845-222593444)
               

               
               3-171, gnl|xenTro1|scaffold_371 (272603-272209)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-171, gnl|bosTau2|chr28 (3576243-3576411)
               

               
               3-171, gnl|canFam2|chr4 (8403187-8402783)
               

               
               3-171, gnl|dasNov1|scaffold_8055 (76561-76976)
               

               
               3-171, gnl|echTel1|scaffold_231514 (18102-18514)
               

               
               3-171, gnl|galGal2|chr3 (34509907-34509518)
               

               
               3-171, gnl|hg17|chr1 (230871681-230872083)
               

               
               3-171, gnl|Hg17|chr1 (230872065-230871897)
               

               
               3-171, gnl|mm7|chr8 (125034708-125035111)
               

               
               3-171, gnl|Mm7|chr8 (125035093-125034925)
               

               
               3-171, gnl|monDom2|scaffold_13 (51882388-51881982)
               

               
               3-171, gnl|oryCun1|scaffold_169060 (7271-7702)
               

               
               3-171, gnl|panTro1|chr1 (214747250-214747654)
               

               
               3-171, gnl|rheMac2|chr1 (222593845-222593444)
               

               
               3-171, gnl|xenTro1|scaffold_371 (272603-272209)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               med (0.116252)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	3-171, gnl\|bosTau2\|chr28 (3576243-3576411)
	3-171, gnl\|canFam2\|chr4 (8403187-8402783)
	3-171, gnl\|dasNov1\|scaffold_8055 (76561-76976)
	3-171, gnl\|echTel1\|scaffold_231514 (18102-18514)
	3-171, gnl\|galGal2\|chr3 (34509907-34509518)
	3-171, gnl\|hg17\|chr1 (230871681-230872083)
	3-171, gnl\|Hg17\|chr1 (230872065-230871897)
	3-171, gnl\|mm7\|chr8 (125034708-125035111)
	3-171, gnl\|Mm7\|chr8 (125035093-125034925)
	3-171, gnl\|monDom2\|scaffold_13 (51882388-51881982)
	3-171, gnl\|oryCun1\|scaffold_169060 (7271-7702)
	3-171, gnl\|panTro1\|chr1 (214747250-214747654)
	3-171, gnl\|rheMac2\|chr1 (222593845-222593444)
	3-171, gnl\|xenTro1\|scaffold_371 (272603-272209)