rmed13c_h19.y1
|
CTGCAGGAATTGCACGAGGCCCGGGCGGGGGAGCCGGCTGGGAGGACTGGAGGAAAGGCC
GGGAGAGCCGTGCAGGCATGGAGGCCACTTCCCGCCACCTTGTCTGTCTGCCGGTCGGTT
CGGTCTTCCCCAGCCCTCCCGGGGGTGGTGGCACAGCTGCCAGCCGAGGCTCCCGCCCTC
CGCAGCCTTGGCCAGGCGCGGCCTCCTAGCCCTTTCCCTCCGGCCGTTGAGGGCGCCGCG
CCCCGCCTTAACTGTGAGCAGAACCTGTGGGCTGCAGGCTCTGGCTGAGGCCGACCCGCA
GCCAGGCAGGGCTGGGCACCGAGGACGCGTCTGGTGGGCTCGCCCGGGTTTTCCTCCCAC
ACCCCCAAAAGCTCGCGTTGGGAAATGCTCTGCCAACGGGTGCCCTGTGGGTATGGGGCA
GACGCCCCCCCTAGCGCCCAGGGAGGCTAAAGCCGCTGTCGGCCCTACTCGAGCAGATCT
AGTCCGGGACTCCTCGCTCCGCGTCTTCGCATATGCTGCCAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGCAGGAATTGCACGAGGCCCGGGCGGGGGAGCCGGCTGGGAGGACTGGAGGAAAGGCC
GGGAGAGCCGTGCAGGCATGGAGGCCACTTCCCGCCACCTTGTCTGTCTGCCGGTCGGTT
CGGTCTTCCCCAGCCCTCCCGGGGGTGGTGGCACAGCTGCCAGCCGAGGCTCCCGCCCTC
CGCAGCCTTGGCCAGGCGCGGCCTCCTAGCCCTTTCCCTCCGGCCGTTGAGGGCGCCGCG
CCCCGCCTTAACTGTGAGCAGAACCTGTGGGCTGCAGGCTCTGGCTGAGGCCGACCCGCA
GCCAGGCAGGGCTGGGCACCGAGGACGCGTCTGGTGGGCTCGCCCGGGTTTTCCTCCCAC
ACCCCCAAAAGCTCGCGTTGGGAAATGCTCTGCCAACGGGTGCCCTGTGGGTATGGGGCA
GACGCCCCCCCTAGCGCCCAGGGAGGCTAAAGCCGCTGTCGGCCCTACTCGAGCAGATCT
AGTCCGGGACTCCTCGCTCCGCGTCTTCGCATATGCTGCCAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
38-166, - strand, RNAmicro p=0.99975 |
|
230-457, - strand, RNAmicro p=0.982018 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
38-166, - strand, RNAmicro p=0.99975 |
|
230-457, - strand, RNAmicro p=0.982018 |
Human gene identifier and UTR site,
human gene reading direction
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20-460, gnl|bosTau2|chr11 (22536100-22536539) |
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20-460, gnl|canFam2|chr10 (48879350-48879684) |
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20-460, gnl|dasNov1|scaffold_30354 (3357-3722) |
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20-460, gnl|echTel1|scaffold_298971 (82905-82538) |
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20-460, gnl|hg17|chr2 (43366191-43366582) |
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20-460, gnl|Hg17|chr2 (43366195-43366648) |
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20-460, gnl|mm7|chr17 (82483150-82483510) |
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20-460, gnl|monDom2|scaffold_1 (1767414-1767827) |
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20-460, gnl|oryCun1|scaffold_196543 (358-84) |
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20-460, gnl|panTro1|chr12 (45012871-45013262) |
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20-460, gnl|rheMac2|chr13 (43346220-43346608) |
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20-460, gnl|rn3|chr6 (7535748-7536110) |
|
20-460, gnl|xenTro1|scaffold_17393 (3454-3818) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
20-460, gnl|bosTau2|chr11 (22536100-22536539) |
|
20-460, gnl|canFam2|chr10 (48879350-48879684) |
|
20-460, gnl|dasNov1|scaffold_30354 (3357-3722) |
|
20-460, gnl|echTel1|scaffold_298971 (82905-82538) |
|
20-460, gnl|hg17|chr2 (43366191-43366582) |
|
20-460, gnl|Hg17|chr2 (43366195-43366648) |
|
20-460, gnl|mm7|chr17 (82483150-82483510) |
|
20-460, gnl|monDom2|scaffold_1 (1767414-1767827) |
|
20-460, gnl|oryCun1|scaffold_196543 (358-84) |
|
20-460, gnl|panTro1|chr12 (45012871-45013262) |
|
20-460, gnl|rheMac2|chr13 (43346220-43346608) |
|
20-460, gnl|rn3|chr6 (7535748-7536110) |
|
20-460, gnl|xenTro1|scaffold_17393 (3454-3818) |
