Non-Coding RNA Search

rmed14c_g7.y1

Sequence:


               
               TGAGGATGCTATTATCACAGGTTTCAGGAATGTAACTATTTGTCCTAACCCAGAAGACAC
TTGTGACTTCGCTAGAGCAGCTCATTTCGCATCCACTCCTTTTCATGAGATGATATGCTT
GAAGGATCTCCCTTCTGATTCTAAGAGACAGTTGCAGGAAGAAGATCTAGATGTAAAGAC
CTCTGAGGACCAACAAACTGCTTGTGGCACTATCTACAATCCAACTCTCAGCATCAAAAA
GCTGAGCCCAATTATTGAAGACAGCCGTGAAGCAACACACTCCTCTGGGTTCTCTGGGTC
TTCTGCCTCAGTTACAAGCACCTCCTCCATCAAATGTCTTCAAATTCCTGAGAAACTGGA
GCTCACTAATGAGACTGCAGATGGCCCTCCTCAGTCACCCTGGTGTTCACAGTATCGCAG
ACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGATGCTATTATCACAGGTTTCAGGAATGTAACTATTTGTCCTAACCCAGAAGACAC
TTGTGACTTCGCTAGAGCAGCTCATTTCGCATCCACTCCTTTTCATGAGATGATATGCTT
GAAGGATCTCCCTTCTGATTCTAAGAGACAGTTGCAGGAAGAAGATCTAGATGTAAAGAC
CTCTGAGGACCAACAAACTGCTTGTGGCACTATCTACAATCCAACTCTCAGCATCAAAAA
GCTGAGCCCAATTATTGAAGACAGCCGTGAAGCAACACACTCCTCTGGGTTCTCTGGGTC
TTCTGCCTCAGTTACAAGCACCTCCTCCATCAAATGTCTTCAAATTCCTGAGAAACTGGA
GCTCACTAATGAGACTGCAGATGGCCCTCCTCAGTCACCCTGGTGTTCACAGTATCGCAG
ACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871836|ref|XP_605720.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871836|ref|XP_605720.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-246, - strand, RNAz p=0.974261

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-246, - strand, RNAz p=0.974261

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-246, gnl|bosTau2|chr10 (23113725-23113480)
               

               
               1-246, gnl|canFam2|chr30 (10386580-10386866)
               

               
               1-246, gnl|echTel1|scaffold_310199 (10963-11251)
               

               
               1-246, gnl|galGal2|chr5 (2850423-2850123)
               

               
               1-246, gnl|hg17|chr15 (38285670-38285958)
               

               
               1-246, gnl|Hg17|chr15 (38285706-38285951)
               

               
               1-246, gnl|loxAfr1|scaffold_202844 (631-918)
               

               
               1-246, gnl|mm7|chr2 (118370745-118371021)
               

               
               1-246, gnl|Mm7|chr2 (118370781-118371014)
               

               
               1-246, gnl|monDom2|scaffold_12 (2370601-2370310)
               

               
               1-246, gnl|oryCun1|scaffold_197265 (997-709)
               

               
               1-246, gnl|panTro1|chr16 (38168130-38168418)
               

               
               1-246, gnl|rheMac2|chr7 (18537488-18537776)
               

               
               1-246, gnl|rn3|chr3 (104997006-104997282)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr10 (23113725-23113480)
               

               
               1-246, gnl|canFam2|chr30 (10386580-10386866)
               

               
               1-246, gnl|echTel1|scaffold_310199 (10963-11251)
               

               
               1-246, gnl|galGal2|chr5 (2850423-2850123)
               

               
               1-246, gnl|hg17|chr15 (38285670-38285958)
               

               
               1-246, gnl|Hg17|chr15 (38285706-38285951)
               

               
               1-246, gnl|loxAfr1|scaffold_202844 (631-918)
               

               
               1-246, gnl|mm7|chr2 (118370745-118371021)
               

               
               1-246, gnl|Mm7|chr2 (118370781-118371014)
               

               
               1-246, gnl|monDom2|scaffold_12 (2370601-2370310)
               

               
               1-246, gnl|oryCun1|scaffold_197265 (997-709)
               

               
               1-246, gnl|panTro1|chr16 (38168130-38168418)
               

               
               1-246, gnl|rheMac2|chr7 (18537488-18537776)
               

               
               1-246, gnl|rn3|chr3 (104997006-104997282)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	1-246, gnl\|bosTau2\|chr10 (23113725-23113480)
	1-246, gnl\|canFam2\|chr30 (10386580-10386866)
	1-246, gnl\|echTel1\|scaffold_310199 (10963-11251)
	1-246, gnl\|galGal2\|chr5 (2850423-2850123)
	1-246, gnl\|hg17\|chr15 (38285670-38285958)
	1-246, gnl\|Hg17\|chr15 (38285706-38285951)
	1-246, gnl\|loxAfr1\|scaffold_202844 (631-918)
	1-246, gnl\|mm7\|chr2 (118370745-118371021)
	1-246, gnl\|Mm7\|chr2 (118370781-118371014)
	1-246, gnl\|monDom2\|scaffold_12 (2370601-2370310)
	1-246, gnl\|oryCun1\|scaffold_197265 (997-709)
	1-246, gnl\|panTro1\|chr16 (38168130-38168418)
	1-246, gnl\|rheMac2\|chr7 (18537488-18537776)
	1-246, gnl\|rn3\|chr3 (104997006-104997282)