Non-Coding RNA Search

rmed17c_c1.y1

Sequence:


               
               TAAAATTCCAGCATGGGATGAATGCAGGTCTAGTTGGGTCTGTGGCTAGCTAGGTTAAAT
ATGTTTCTAACCACAGAGAATTTAATATATATATATATTTCACAGGAATATGCTTTTTTT
TTTTTTTTTTTTTTTTAAAGGCTAAATGTGTTCACCATTTTAGCCTGTAGATTTATTACC
ATTTTCCAAATTTAGCTCCCGGCACGCACAGATCCCACCCCCTATGTGTAGGGTGTTGGT
GGACTTCCTAACAGAATATTTGGAGGCCTGGATGAATTTGGGCTTAGGGGTAGAGGTTAC
AGAGGGAGGCAAGATTTTCAACTGGAAAAACGGGTGGAATTTGGACTGATCAACTTGAGA
TTGAAAAACTGCTATTCCTTTGGTTCTTGGTAGCATCTCCCCCAACCCTGAGCGATCCTC
AGGCTAGATAGTGAAACGATCCAATGCCAGTGTCATTTGGTACGTAAGTTCCAAAACGGA
ACATTTTATACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAATTCCAGCATGGGATGAATGCAGGTCTAGTTGGGTCTGTGGCTAGCTAGGTTAAAT
ATGTTTCTAACCACAGAGAATTTAATATATATATATATTTCACAGGAATATGCTTTTTTT
TTTTTTTTTTTTTTTTAAAGGCTAAATGTGTTCACCATTTTAGCCTGTAGATTTATTACC
ATTTTCCAAATTTAGCTCCCGGCACGCACAGATCCCACCCCCTATGTGTAGGGTGTTGGT
GGACTTCCTAACAGAATATTTGGAGGCCTGGATGAATTTGGGCTTAGGGGTAGAGGTTAC
AGAGGGAGGCAAGATTTTCAACTGGAAAAACGGGTGGAATTTGGACTGATCAACTTGAGA
TTGAAAAACTGCTATTCCTTTGGTTCTTGGTAGCATCTCCCCCAACCCTGAGCGATCCTC
AGGCTAGATAGTGAAACGATCCAATGCCAGTGTCATTTGGTACGTAAGTTCCAAAACGGA
ACATTTTATACTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-113, - strand, RNAz p=0.999136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, - strand, RNAz p=0.999136

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-494, gnl|bosTau2|chr5 (25569985-25569501)
               

               
               1-494, gnl|Hg17|chr12 (46724535-46724010)
               

               
               1-494, gnl|Mm7|chr15 (98045331-98044792)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-494, gnl|bosTau2|chr5 (25569985-25569501)
               

               
               1-494, gnl|Hg17|chr12 (46724535-46724010)
               

               
               1-494, gnl|Mm7|chr15 (98045331-98044792)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	1-494, gnl\|bosTau2\|chr5 (25569985-25569501)
	1-494, gnl\|Hg17\|chr12 (46724535-46724010)
	1-494, gnl\|Mm7\|chr15 (98045331-98044792)