Non-Coding RNA Search

rmed18c_h5.y1

Sequence:


               
               CAGAGGGGAAAACTGATGACTTCTAGATCACAGCTCAAGTTTTAAGACGGACGCAAGCGG
GACAGTCTTCTGATGGGCTTTAAACTTTGAACTGGATGTGGGCATTTTTTTCTCTGATGA
CAGAATCACTGCAACTTCCCCTTTGCAGTTGCTTCCTTTCCTTAAAGGTAGCCGTATCTT
GTTTTCTTTAAAAACCTTTCCCTTCCAAATTTGCCTGTCATGCCGACTGTCATTAGCGCG
TCTATGGCCCCACGGACAGGGGCCGAGCCCAGGTCCCCAGGACCGATGCCCCAGGCGGCC
CAGGGCAAGGGCACGGAGGCCGGGGTTGGAAACCCAGGTGGTAAATACTCAGCCATCATC
AGCCGCAATTTTCCCATTATGGGCGTGAAAGAGAAGACATTTGAGCAGCTTCACAAGAAA
TGCCTAGAAAAGAAGGTTCTTTATCTGGATCCTGAGTTCCCACCGGACGAGACCTCGCTC
TTTTATAGCCAGAAGTCCCCATCCAGTTCGTCTGGAAGAGACCTCCGGAAATTTGTGAGA
ATCCCCGATTTATCATTGGTGGAGCCAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGGGAAAACTGATGACTTCTAGATCACAGCTCAAGTTTTAAGACGGACGCAAGCGG
GACAGTCTTCTGATGGGCTTTAAACTTTGAACTGGATGTGGGCATTTTTTTCTCTGATGA
CAGAATCACTGCAACTTCCCCTTTGCAGTTGCTTCCTTTCCTTAAAGGTAGCCGTATCTT
GTTTTCTTTAAAAACCTTTCCCTTCCAAATTTGCCTGTCATGCCGACTGTCATTAGCGCG
TCTATGGCCCCACGGACAGGGGCCGAGCCCAGGTCCCCAGGACCGATGCCCCAGGCGGCC
CAGGGCAAGGGCACGGAGGCCGGGGTTGGAAACCCAGGTGGTAAATACTCAGCCATCATC
AGCCGCAATTTTCCCATTATGGGCGTGAAAGAGAAGACATTTGAGCAGCTTCACAAGAAA
TGCCTAGAAAAGAAGGTTCTTTATCTGGATCCTGAGTTCCCACCGGACGAGACCTCGCTC
TTTTATAGCCAGAAGTCCCCATCCAGTTCGTCTGGAAGAGACCTCCGGAAATTTGTGAGA
ATCCCCGATTTATCATTGGTGGAGCCAACAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               245-364, - strand, RNAz p=0.663734
               

               
               410-528, - strand, RNAz p=0.819599

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-364, - strand, RNAz p=0.663734
               

               
               410-528, - strand, RNAz p=0.819599

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               257-382, - strand, RNAmicro p=0.939675

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               257-382, - strand, RNAmicro p=0.939675

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-528, gnl|bosTau2|chr10 (17181078-17181589)
               

               
               7-528, gnl|Hg17|chr15 (40439083-40439605)
               

               
               7-528, gnl|Mm7|chr2 (120204509-120205031)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-528, gnl|bosTau2|chr10 (17181078-17181589)
               

               
               7-528, gnl|Hg17|chr15 (40439083-40439605)
               

               
               7-528, gnl|Mm7|chr2 (120204509-120205031)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	245-364, - strand, RNAz p=0.663734
	410-528, - strand, RNAz p=0.819599

	7-528, gnl\|bosTau2\|chr10 (17181078-17181589)
	7-528, gnl\|Hg17\|chr15 (40439083-40439605)
	7-528, gnl\|Mm7\|chr2 (120204509-120205031)