Non-Coding RNA Search

rmed18c_m18.y1

Sequence:


               
               TGACGGAGGCGGCCCACGTGCGCATGCTCCGGGTGCTGCATGACCTCTTCTACCAGCCCA
TGGCGGAGGGGGGCTTCTTTCTCCTGGAGGAACTGCAGAACATCTTCCCCAGCCTGGAAG
AGCTCATCGAGGTGCATTCCCTGTTCCTGGATCGCCTGATGAAGCGGAGGCAGGACAGTG
GCTACCTCATTGAGGAGATGGGAGATGTGCTGTGGGCCCAGTTGGATGGTCCCGAGGGCT
CCTGGTTCCAGAAAATCTCCTCCCGCTTCTGCAGCCGCCAGTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACGGAGGCGGCCCACGTGCGCATGCTCCGGGTGCTGCATGACCTCTTCTACCAGCCCA
TGGCGGAGGGGGGCTTCTTTCTCCTGGAGGAACTGCAGAACATCTTCCCCAGCCTGGAAG
AGCTCATCGAGGTGCATTCCCTGTTCCTGGATCGCCTGATGAAGCGGAGGCAGGACAGTG
GCTACCTCATTGAGGAGATGGGAGATGTGCTGTGGGCCCAGTTGGATGGTCCCGAGGGCT
CCTGGTTCCAGAAAATCTCCTCCCGCTTCTGCAGCCGCCAGTCGT

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-138, gnl|bosTau2|chr18 (44655462-44655599)
               

               
               1-138, gnl|canFam2|chrUn (68395671-68395847)
               

               
               1-138, gnl|danRer3|chr5 (65500788-65500629)
               

               
               1-138, gnl|dasNov1|scaffold_184430 (3877-4045)
               

               
               1-138, gnl|echTel1|scaffold_281953 (1105-958)
               

               
               1-138, gnl|fr1|chrUn (285330890-285331066)
               

               
               1-138, gnl|galGal2|chrUn (121809227-121809078)
               

               
               1-138, gnl|hg17|chr19 (47097854-47098031)
               

               
               1-138, gnl|Hg17|chr19 (47097886-47098023)
               

               
               1-138, gnl|loxAfr1|scaffold_57777 (4612-4437)
               

               
               1-138, gnl|mm7|chr7 (21711339-21711513)
               

               
               1-138, gnl|Mm7|chr7 (21711368-21711505)
               

               
               1-138, gnl|oryCun1|scaffold_106717 (9725-9880)
               

               
               1-138, gnl|panTro1|chr20 (43978120-43978297)
               

               
               1-138, gnl|rheMac2|chr1 (135557868-135557693)
               

               
               1-138, gnl|rn3|chr1 (80299425-80299598)
               

               
               1-138, gnl|tetNig1|chr8 (706605-706449)
               

               
               1-138, gnl|xenTro1|scaffold_477 (846106-845931)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-138, gnl|bosTau2|chr18 (44655462-44655599)
               

               
               1-138, gnl|canFam2|chrUn (68395671-68395847)
               

               
               1-138, gnl|danRer3|chr5 (65500788-65500629)
               

               
               1-138, gnl|dasNov1|scaffold_184430 (3877-4045)
               

               
               1-138, gnl|echTel1|scaffold_281953 (1105-958)
               

               
               1-138, gnl|fr1|chrUn (285330890-285331066)
               

               
               1-138, gnl|galGal2|chrUn (121809227-121809078)
               

               
               1-138, gnl|hg17|chr19 (47097854-47098031)
               

               
               1-138, gnl|Hg17|chr19 (47097886-47098023)
               

               
               1-138, gnl|loxAfr1|scaffold_57777 (4612-4437)
               

               
               1-138, gnl|mm7|chr7 (21711339-21711513)
               

               
               1-138, gnl|Mm7|chr7 (21711368-21711505)
               

               
               1-138, gnl|oryCun1|scaffold_106717 (9725-9880)
               

               
               1-138, gnl|panTro1|chr20 (43978120-43978297)
               

               
               1-138, gnl|rheMac2|chr1 (135557868-135557693)
               

               
               1-138, gnl|rn3|chr1 (80299425-80299598)
               

               
               1-138, gnl|tetNig1|chr8 (706605-706449)
               

               
               1-138, gnl|xenTro1|scaffold_477 (846106-845931)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	1-138, gnl\|bosTau2\|chr18 (44655462-44655599)
	1-138, gnl\|canFam2\|chrUn (68395671-68395847)
	1-138, gnl\|danRer3\|chr5 (65500788-65500629)
	1-138, gnl\|dasNov1\|scaffold_184430 (3877-4045)
	1-138, gnl\|echTel1\|scaffold_281953 (1105-958)
	1-138, gnl\|fr1\|chrUn (285330890-285331066)
	1-138, gnl\|galGal2\|chrUn (121809227-121809078)
	1-138, gnl\|hg17\|chr19 (47097854-47098031)
	1-138, gnl\|Hg17\|chr19 (47097886-47098023)
	1-138, gnl\|loxAfr1\|scaffold_57777 (4612-4437)
	1-138, gnl\|mm7\|chr7 (21711339-21711513)
	1-138, gnl\|Mm7\|chr7 (21711368-21711505)
	1-138, gnl\|oryCun1\|scaffold_106717 (9725-9880)
	1-138, gnl\|panTro1\|chr20 (43978120-43978297)
	1-138, gnl\|rheMac2\|chr1 (135557868-135557693)
	1-138, gnl\|rn3\|chr1 (80299425-80299598)
	1-138, gnl\|tetNig1\|chr8 (706605-706449)
	1-138, gnl\|xenTro1\|scaffold_477 (846106-845931)