Non-Coding RNA Search

rmed20c_j21.y1

Sequence:


               
               CTGTCAGGTGGAGATGGAGCCTGGGCCCATGTGGATGCTCCCTGCCCATTTCACATACCT
TGGAACCAGGATATGGTGGGAGGGAGGGCAGACTCCAGGCCATGGGGGCATGAAGGGTGT
CCAAGTGCCATCCTTCTAGGTGAGGTGATGCCTGGCCTCAGAGCAGGGTGGCCTCAGGGC
CCTGAGTCCTGGGATTTGCAACTGGGATGTGTCATTCAAGTCCAGGCTCTGATGCAAGGC
TTCAAGAGGTAACAAGTATCCTTCCTCCCAGGGTTAATATTTCTCTTTATATACCCGGGG
GTTAATCTCTCTGTAATCACCCTAAATATGACACCTTACCTTTTAGAACTGAACAATAAT
TTAAAAGTAATTGCTGGAGTTCCAATTACTGTCTGTAATGGGATCGATGGTATTTCTGCA
GCACCAGGACCCAGGTTCAAAACCCTGCCAGCACAGTGGGTTAAAGGATCAGGTGGTGTA
CGTTGTCACAACTGCATCTGGGATGATTCCTGGCCCAGAAACTCCATATggagttcccgt
cgtggcacagtggttaacgaatccgactaggaaccatgaggttgtgggttcggtccctgc
cc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCAGGTGGAGATGGAGCCTGGGCCCATGTGGATGCTCCCTGCCCATTTCACATACCT
TGGAACCAGGATATGGTGGGAGGGAGGGCAGACTCCAGGCCATGGGGGCATGAAGGGTGT
CCAAGTGCCATCCTTCTAGGTGAGGTGATGCCTGGCCTCAGAGCAGGGTGGCCTCAGGGC
CCTGAGTCCTGGGATTTGCAACTGGGATGTGTCATTCAAGTCCAGGCTCTGATGCAAGGC
TTCAAGAGGTAACAAGTATCCTTCCTCCCAGGGTTAATATTTCTCTTTATATACCCGGGG
GTTAATCTCTCTGTAATCACCCTAAATATGACACCTTACCTTTTAGAACTGAACAATAAT
TTAAAAGTAATTGCTGGAGTTCCAATTACTGTCTGTAATGGGATCGATGGTATTTCTGCA
GCACCAGGACCCAGGTTCAAAACCCTGCCAGCACAGTGGGTTAAAGGATCAGGTGGTGTA
CGTTGTCACAACTGCATCTGGGATGATTCCTGGCCCAGAAACTCCATATggagttcccgt
cgtggcacagtggttaacgaatccgactaggaaccatgaggttgtgggttcggtccctgc
cc

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               139-255, + strand, RNAz p=0.548039

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-255, + strand, RNAz p=0.548039

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               128-292, gnl|bosTau2|chr23 (12996767-12996934)
               

               
               128-292, gnl|Hg17|chr6 (42999149-42999328)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-292, gnl|bosTau2|chr23 (12996767-12996934)
               

               
               128-292, gnl|Hg17|chr6 (42999149-42999328)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	128-292, gnl\|bosTau2\|chr23 (12996767-12996934)
	128-292, gnl\|Hg17\|chr6 (42999149-42999328)