Non-Coding RNA Search

rmed24c_f11.y1

Sequence:


               
               CTCCACGTCCCGCCCTTCCTTCTACCTACGGGCCGGCTTGGCTAGTGATGAGATATTTGG
GATCTCAGCTGTGGAAGCGGTGACGGCAGCTGCGATCACGTCCGCGAGCGCAACCATGGC
CGAGTACCAAGCCCAGAATAAACCCAAGCTCATCGCTGACGTCCGACGGAGGTTCGAAGC
TGAGTATGTGGCAGATAAGTCAGATAAATATGATCCACGTGATGTTGAAAGACTACAACA
AGATGATAACTGGGTGGAAAGTTACTTATGTTGGAGGCATAATATTGTAGATGAAACACT
GAAGATGCTTGATGAGAGTTTTCAGTGGAGGAAAGAGATGTCTGTCAATGACCTGACGGA
AGCCTCCATTCCCAGGTGGTTGTTGGAAATTGGTGGTATTTATCTCCACGGTTATGACAA
AGAAGGCAACAAGTTGTTCTGGATCCGGGTGAAGTATCATATAAAAGACCATAAGACCAT
ACTGGACAAAAAGAAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCACGTCCCGCCCTTCCTTCTACCTACGGGCCGGCTTGGCTAGTGATGAGATATTTGG
GATCTCAGCTGTGGAAGCGGTGACGGCAGCTGCGATCACGTCCGCGAGCGCAACCATGGC
CGAGTACCAAGCCCAGAATAAACCCAAGCTCATCGCTGACGTCCGACGGAGGTTCGAAGC
TGAGTATGTGGCAGATAAGTCAGATAAATATGATCCACGTGATGTTGAAAGACTACAACA
AGATGATAACTGGGTGGAAAGTTACTTATGTTGGAGGCATAATATTGTAGATGAAACACT
GAAGATGCTTGATGAGAGTTTTCAGTGGAGGAAAGAGATGTCTGTCAATGACCTGACGGA
AGCCTCCATTCCCAGGTGGTTGTTGGAAATTGGTGGTATTTATCTCCACGGTTATGACAA
AGAAGGCAACAAGTTGTTCTGGATCCGGGTGAAGTATCATATAAAAGACCATAAGACCAT
ACTGGACAAAAAGAAGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26333515|dbj|BAC30475.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26333515|dbj|BAC30475.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               231-350, + strand, RNAz p=0.941945
               

               
               232-350, + strand, RNAz p=0.886509

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-350, + strand, RNAz p=0.941945
               

               
               232-350, + strand, RNAz p=0.886509

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC030641, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC030641, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               193-350, gnl|bosTau2|chrX (40838873-40839030)
               

               
               193-350, gnl|canFam2|chrX (11123423-11123560)
               

               
               193-350, gnl|danRer3|chr8 (18751277-18751412)
               

               
               193-350, gnl|echTel1|scaffold_123103 (399-535)
               

               
               193-350, gnl|fr1|chrUn (176580668-176580805)
               

               
               193-350, gnl|galGal2|chr1 (115608661-115608529)
               

               
               193-350, gnl|hg17|chrX (14670481-14670618)
               

               
               193-350, gnl|Hg17|chrX (14670500-14670657)
               

               
               193-350, gnl|loxAfr1|scaffold_16086 (28403-28535)
               

               
               193-350, gnl|mm7|chrX (159739521-159739385)
               

               
               193-350, gnl|Mm7|chrX (159739501-159739344)
               

               
               193-350, gnl|monDom2|scaffold_25 (25673171-25673034)
               

               
               193-350, gnl|panTro1|chrX (15125456-15125593)
               

               
               193-350, gnl|rheMac2|chrX (12635012-12635149)
               

               
               193-350, gnl|rn3|chrX (50227513-50227649)
               

               
               193-350, gnl|tetNig1|chr2 (10265214-10265075)
               

               
               193-350, gnl|xenTro1|scaffold_485 (94139-94257)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-350, gnl|bosTau2|chrX (40838873-40839030)
               

               
               193-350, gnl|canFam2|chrX (11123423-11123560)
               

               
               193-350, gnl|danRer3|chr8 (18751277-18751412)
               

               
               193-350, gnl|echTel1|scaffold_123103 (399-535)
               

               
               193-350, gnl|fr1|chrUn (176580668-176580805)
               

               
               193-350, gnl|galGal2|chr1 (115608661-115608529)
               

               
               193-350, gnl|hg17|chrX (14670481-14670618)
               

               
               193-350, gnl|Hg17|chrX (14670500-14670657)
               

               
               193-350, gnl|loxAfr1|scaffold_16086 (28403-28535)
               

               
               193-350, gnl|mm7|chrX (159739521-159739385)
               

               
               193-350, gnl|Mm7|chrX (159739501-159739344)
               

               
               193-350, gnl|monDom2|scaffold_25 (25673171-25673034)
               

               
               193-350, gnl|panTro1|chrX (15125456-15125593)
               

               
               193-350, gnl|rheMac2|chrX (12635012-12635149)
               

               
               193-350, gnl|rn3|chrX (50227513-50227649)
               

               
               193-350, gnl|tetNig1|chr2 (10265214-10265075)
               

               
               193-350, gnl|xenTro1|scaffold_485 (94139-94257)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	231-350, + strand, RNAz p=0.941945
	232-350, + strand, RNAz p=0.886509

	193-350, gnl\|bosTau2\|chrX (40838873-40839030)
	193-350, gnl\|canFam2\|chrX (11123423-11123560)
	193-350, gnl\|danRer3\|chr8 (18751277-18751412)
	193-350, gnl\|echTel1\|scaffold_123103 (399-535)
	193-350, gnl\|fr1\|chrUn (176580668-176580805)
	193-350, gnl\|galGal2\|chr1 (115608661-115608529)
	193-350, gnl\|hg17\|chrX (14670481-14670618)
	193-350, gnl\|Hg17\|chrX (14670500-14670657)
	193-350, gnl\|loxAfr1\|scaffold_16086 (28403-28535)
	193-350, gnl\|mm7\|chrX (159739521-159739385)
	193-350, gnl\|Mm7\|chrX (159739501-159739344)
	193-350, gnl\|monDom2\|scaffold_25 (25673171-25673034)
	193-350, gnl\|panTro1\|chrX (15125456-15125593)
	193-350, gnl\|rheMac2\|chrX (12635012-12635149)
	193-350, gnl\|rn3\|chrX (50227513-50227649)
	193-350, gnl\|tetNig1\|chr2 (10265214-10265075)
	193-350, gnl\|xenTro1\|scaffold_485 (94139-94257)