Non-Coding RNA Search

rmed25c_l20.y1

Sequence:


               
               GTCATGGTGCTGAAAATGAACAGACTCCCCAGTAACCGGGGAAACACGCTACGGGAGGTG
CAGCTGATGAACCGACTTCGGCACCCCAACATCCTAAGGTTCATGGGGGTCTGTGTGCAC
CAGGGACAGCTGCATGCTCTTACAGAGGTGAGGATGAACCAGCAAGGGGGGACCCCACCA
CCAAGGGGCGAGTCAGCGGCCTGGTGCATCTACAGACGAATAATGAGGGGCAGCAGGACG
TCCTCCCAGGGGAGGCTTTCCTGAACTTCCCTTTAGGCAAACCACAAATAAAAGGCCTCA
GCTGGTCCCGTCCTTTATATCCTCTAGAACGGTgctgtccaatagatcttcctgcaaaga
tgaaaatgttctatatctgcgctgtccaaaaccacagccactagccacatgtggctaagg
atccctgggaatgtggctagtgtgactgaggaactgaatgttccattttgtttaaattta
aATAGTTGTGCGTGTGTATGGGACAGGACAGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATGGTGCTGAAAATGAACAGACTCCCCAGTAACCGGGGAAACACGCTACGGGAGGTG
CAGCTGATGAACCGACTTCGGCACCCCAACATCCTAAGGTTCATGGGGGTCTGTGTGCAC
CAGGGACAGCTGCATGCTCTTACAGAGGTGAGGATGAACCAGCAAGGGGGGACCCCACCA
CCAAGGGGCGAGTCAGCGGCCTGGTGCATCTACAGACGAATAATGAGGGGCAGCAGGACG
TCCTCCCAGGGGAGGCTTTCCTGAACTTCCCTTTAGGCAAACCACAAATAAAAGGCCTCA
GCTGGTCCCGTCCTTTATATCCTCTAGAACGGTgctgtccaatagatcttcctgcaaaga
tgaaaatgttctatatctgcgctgtccaaaaccacagccactagccacatgtggctaagg
atccctgggaatgtggctagtgtgactgaggaactgaatgttccattttgtttaaattta
aATAGTTGTGCGTGTGTATGGGACAGGACAGGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50779818|ref|XP_427433.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50779818|ref|XP_427433.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               366-456, - strand, RNAz p=0.910613

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-456, - strand, RNAz p=0.910613

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               319-481, gnl|bosTau2|chr13 (56435198-56435035)
               

               
               319-481, gnl|canFam2|chr24 (36839811-36840104)
               

               
               319-481, gnl|dasNov1|scaffold_8104 (2479-2832)
               

               
               319-481, gnl|echTel1|scaffold_286331 (47735-47390)
               

               
               319-481, gnl|hg17|chr20 (44690737-44691051)
               

               
               319-481, gnl|Hg17|chr20 (44690921-44690759)
               

               
               319-481, gnl|loxAfr1|scaffold_10350 (8922-8458)
               

               
               319-481, gnl|oryCun1|scaffold_168567 (1039-783)
               

               
               319-481, gnl|panTro1|chr21 (47215946-47216261)
               

               
               319-481, gnl|rheMac2|chr10 (17848656-17848341)
               

               
               319-481, gnl|rn3|chr3 (156401511-156401270)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               319-481, gnl|bosTau2|chr13 (56435198-56435035)
               

               
               319-481, gnl|canFam2|chr24 (36839811-36840104)
               

               
               319-481, gnl|dasNov1|scaffold_8104 (2479-2832)
               

               
               319-481, gnl|echTel1|scaffold_286331 (47735-47390)
               

               
               319-481, gnl|hg17|chr20 (44690737-44691051)
               

               
               319-481, gnl|Hg17|chr20 (44690921-44690759)
               

               
               319-481, gnl|loxAfr1|scaffold_10350 (8922-8458)
               

               
               319-481, gnl|oryCun1|scaffold_168567 (1039-783)
               

               
               319-481, gnl|panTro1|chr21 (47215946-47216261)
               

               
               319-481, gnl|rheMac2|chr10 (17848656-17848341)
               

               
               319-481, gnl|rn3|chr3 (156401511-156401270)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	319-481, gnl\|bosTau2\|chr13 (56435198-56435035)
	319-481, gnl\|canFam2\|chr24 (36839811-36840104)
	319-481, gnl\|dasNov1\|scaffold_8104 (2479-2832)
	319-481, gnl\|echTel1\|scaffold_286331 (47735-47390)
	319-481, gnl\|hg17\|chr20 (44690737-44691051)
	319-481, gnl\|Hg17\|chr20 (44690921-44690759)
	319-481, gnl\|loxAfr1\|scaffold_10350 (8922-8458)
	319-481, gnl\|oryCun1\|scaffold_168567 (1039-783)
	319-481, gnl\|panTro1\|chr21 (47215946-47216261)
	319-481, gnl\|rheMac2\|chr10 (17848656-17848341)
	319-481, gnl\|rn3\|chr3 (156401511-156401270)