Non-Coding RNA Search

rmed26c_c19.y1

Sequence:


               
               CGGCAACGAGAGTTGCCGGCATCGTCAAGGTCCAGGCCATGTTCAGCTCCAGCGCGAAGA
TCGTGAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCGGGCATCTCCCAGGCCCTCC
TGGAGCTGGAGATGAACTCGGACCTCAAGGCCCAGCTGCGCGAGCTGAACATCACGGCCG
CCAAGGAAATCGAAGTGGGCGGCGGTCGGAAGGCCATCATCATCTTTGTGCCGGTGCCCC
AACTGAAGTCCTTCCAGAAGATTCAGGTGCGGCTCGTGCGCGAGCTGGAGAAGAAGTTCA
GCGGGAAGCACGTGGTCTTCATCGCCCAGAGGAGAATTCTGCCCAAGCCAACTCGGAAAA
GCCGTACAAAAAATAAGCAGAAGCGTCCCAGAAGCCGCACGCTGACAGCCGTGCACGATG
CCATCCTGGAGGACCTGGTTTTCCCGAGTGAGATTGTGGGCAAGAGAATCCGCGTGAAGC
TGGACGGCAGCCGCCTCATCAAGGTCCATTTGGACAAAGCACAGCAGAACAACGTGGAGC
ACAAGGTTGAAACATTTTCTGGTGTCTATAAGAAGCTCACGGGCAAGGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCAACGAGAGTTGCCGGCATCGTCAAGGTCCAGGCCATGTTCAGCTCCAGCGCGAAGA
TCGTGAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCGGGCATCTCCCAGGCCCTCC
TGGAGCTGGAGATGAACTCGGACCTCAAGGCCCAGCTGCGCGAGCTGAACATCACGGCCG
CCAAGGAAATCGAAGTGGGCGGCGGTCGGAAGGCCATCATCATCTTTGTGCCGGTGCCCC
AACTGAAGTCCTTCCAGAAGATTCAGGTGCGGCTCGTGCGCGAGCTGGAGAAGAAGTTCA
GCGGGAAGCACGTGGTCTTCATCGCCCAGAGGAGAATTCTGCCCAAGCCAACTCGGAAAA
GCCGTACAAAAAATAAGCAGAAGCGTCCCAGAAGCCGCACGCTGACAGCCGTGCACGATG
CCATCCTGGAGGACCTGGTTTTCCCGAGTGAGATTGTGGGCAAGAGAATCCGCGTGAAGC
TGGACGGCAGCCGCCTCATCAAGGTCCATTTGGACAAAGCACAGCAGAACAACGTGGAGC
ACAAGGTTGAAACATTTTCTGGTGTCTATAAGAAGCTCACGGGCAAGGACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14039950|gb|AAK53430.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14039950|gb|AAK53430.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-159, - strand, RNAz p=0.981451

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-159, - strand, RNAz p=0.981451

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-589, gnl|bosTau2|chr11 (48700584-48701129)
               

               
               42-589, gnl|Hg17|chr17 (23818970-23819517)
               

               
               42-589, gnl|Mm7|chrX (147668793-147668246)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-589, gnl|bosTau2|chr11 (48700584-48701129)
               

               
               42-589, gnl|Hg17|chr17 (23818970-23819517)
               

               
               42-589, gnl|Mm7|chrX (147668793-147668246)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	42-589, gnl\|bosTau2\|chr11 (48700584-48701129)
	42-589, gnl\|Hg17\|chr17 (23818970-23819517)
	42-589, gnl\|Mm7\|chrX (147668793-147668246)