Non-Coding RNA Search

rmed26c_e16.y1

Sequence:


               
               GCTCGCTGGACTGAATCCAAACCTGAATGTCAACAGCATGGACATGACTGGTGGTTTGTC
CGTGAAGGACCCGTCTCAGTCCCAGTCCCGCCTCCCTCAGTGGACACACCCCAGCCCGAT
GGACAGCTTACCCGGTGCTGCTTCTCCGCTCGACCAGAACCCCAGCAAGCATGGTACGTC
CCGGCCTCGGCGCCCGGCATCTGGACGCCGCTCTTCTACCCACAGGTCGCCCGCACTGCT
ACTCTTACCGCGTTCCTTGTCTAAGAAGTCGGTGCTGAAAGCTGAATGAAACGCTTCCAA
GAGGGAGTTGCTGCTGTAGTGCAGCAGGTTAAGGAGCCGCCGGTGTTGACTCTGGGGAGG
CTCAGGTCGTTGCTGGGGCGCAAGTTCCATCCTCATTCCAGGAACTTCCACGTACCATGG
GCGCAGCCAGAAAAAAAAAAAAAAAAATCCAGGAGACTAAAGCAAGCAGAACAAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCGCTGGACTGAATCCAAACCTGAATGTCAACAGCATGGACATGACTGGTGGTTTGTC
CGTGAAGGACCCGTCTCAGTCCCAGTCCCGCCTCCCTCAGTGGACACACCCCAGCCCGAT
GGACAGCTTACCCGGTGCTGCTTCTCCGCTCGACCAGAACCCCAGCAAGCATGGTACGTC
CCGGCCTCGGCGCCCGGCATCTGGACGCCGCTCTTCTACCCACAGGTCGCCCGCACTGCT
ACTCTTACCGCGTTCCTTGTCTAAGAAGTCGGTGCTGAAAGCTGAATGAAACGCTTCCAA
GAGGGAGTTGCTGCTGTAGTGCAGCAGGTTAAGGAGCCGCCGGTGTTGACTCTGGGGAGG
CTCAGGTCGTTGCTGGGGCGCAAGTTCCATCCTCATTCCAGGAACTTCCACGTACCATGG
GCGCAGCCAGAAAAAAAAAAAAAAAAATCCAGGAGACTAAAGCAAGCAGAACAAGCAC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               5-217, gnl|bosTau2|chr19 (47939204-47938991)
               

               
               5-217, gnl|canFam2|chr9 (6033029-6032799)
               

               
               5-217, gnl|danRer3|chr3 (31391950-31392128)
               

               
               5-217, gnl|dasNov1|scaffold_6631 (81963-82197)
               

               
               5-217, gnl|echTel1|scaffold_308769 (71842-72047)
               

               
               5-217, gnl|fr1|chrUn (86814171-86813999)
               

               
               5-217, gnl|galGal2|chr18 (3878659-3878891)
               

               
               5-217, gnl|hg17|chr17 (73599081-73599311)
               

               
               5-217, gnl|Hg17|chr17 (73599115-73599327)
               

               
               5-217, gnl|loxAfr1|scaffold_27285 (1128-897)
               

               
               5-217, gnl|mm7|chr11 (117861987-117862217)
               

               
               5-217, gnl|Mm7|chr11 (117862021-117862195)
               

               
               5-217, gnl|monDom2|scaffold_18 (6821869-6822084)
               

               
               5-217, gnl|oryCun1|scaffold_196468 (11207-11437)
               

               
               5-217, gnl|panTro1|chr19 (77144264-77144494)
               

               
               5-217, gnl|rheMac2|chr16 (73381577-73381808)
               

               
               5-217, gnl|tetNig1|chr3 (8619293-8619113)
               

               
               5-217, gnl|xenTro1|scaffold_135 (1476550-1476745)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-217, gnl|bosTau2|chr19 (47939204-47938991)
               

               
               5-217, gnl|canFam2|chr9 (6033029-6032799)
               

               
               5-217, gnl|danRer3|chr3 (31391950-31392128)
               

               
               5-217, gnl|dasNov1|scaffold_6631 (81963-82197)
               

               
               5-217, gnl|echTel1|scaffold_308769 (71842-72047)
               

               
               5-217, gnl|fr1|chrUn (86814171-86813999)
               

               
               5-217, gnl|galGal2|chr18 (3878659-3878891)
               

               
               5-217, gnl|hg17|chr17 (73599081-73599311)
               

               
               5-217, gnl|Hg17|chr17 (73599115-73599327)
               

               
               5-217, gnl|loxAfr1|scaffold_27285 (1128-897)
               

               
               5-217, gnl|mm7|chr11 (117861987-117862217)
               

               
               5-217, gnl|Mm7|chr11 (117862021-117862195)
               

               
               5-217, gnl|monDom2|scaffold_18 (6821869-6822084)
               

               
               5-217, gnl|oryCun1|scaffold_196468 (11207-11437)
               

               
               5-217, gnl|panTro1|chr19 (77144264-77144494)
               

               
               5-217, gnl|rheMac2|chr16 (73381577-73381808)
               

               
               5-217, gnl|tetNig1|chr3 (8619293-8619113)
               

               
               5-217, gnl|xenTro1|scaffold_135 (1476550-1476745)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	5-217, gnl\|bosTau2\|chr19 (47939204-47938991)
	5-217, gnl\|canFam2\|chr9 (6033029-6032799)
	5-217, gnl\|danRer3\|chr3 (31391950-31392128)
	5-217, gnl\|dasNov1\|scaffold_6631 (81963-82197)
	5-217, gnl\|echTel1\|scaffold_308769 (71842-72047)
	5-217, gnl\|fr1\|chrUn (86814171-86813999)
	5-217, gnl\|galGal2\|chr18 (3878659-3878891)
	5-217, gnl\|hg17\|chr17 (73599081-73599311)
	5-217, gnl\|Hg17\|chr17 (73599115-73599327)
	5-217, gnl\|loxAfr1\|scaffold_27285 (1128-897)
	5-217, gnl\|mm7\|chr11 (117861987-117862217)
	5-217, gnl\|Mm7\|chr11 (117862021-117862195)
	5-217, gnl\|monDom2\|scaffold_18 (6821869-6822084)
	5-217, gnl\|oryCun1\|scaffold_196468 (11207-11437)
	5-217, gnl\|panTro1\|chr19 (77144264-77144494)
	5-217, gnl\|rheMac2\|chr16 (73381577-73381808)
	5-217, gnl\|tetNig1\|chr3 (8619293-8619113)
	5-217, gnl\|xenTro1\|scaffold_135 (1476550-1476745)