Non-Coding RNA Search

rmed32c_i4.y1

Sequence:


               
               TCCAAGATGCCCAAGGGGAAGAAGGCCAAGGGCAAGAAGGTGGCCCCGGCCCCTGCCGTC
GTGAAGAAGCAGGAGGCCAAGAAGGTGGTAAACCCCCTGTTTGAGAAAAGGCCGAAGAAT
TTTGGCATCGGACAGGACATCCAGCCCAAGAGGGACCTCACCCGTTTTGTCAAATGGCCC
CGCTACATCCGGCTGCAGCGGCAAAGGGCCATTCTCTATAAGCGGCTGAAGGTGCCTCCC
GCAATTAACCAGTTTACCCAGGCCTTGGACCGCCAAACAGCTACTCAGCTGCTTAAGCTG
GCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAGGTTGCTGGCCCGAGCT
GAGAAGAAGGCTGCAGGCAAAGGCGATGTCCCCACCAAGAGGCCGCCTGTCCTTCGAGCA
GGGGTGAATACTGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATCGCA
CACGACGTGGATCCCATTGAGCTGGTGGTCTTCCTGCCGGCCCTGTGTCGGAAGATGGGG
GTCCCCTACTGCATCATCAAGGGCAAGGCCAGGCTGGGGCGGCTGGTCCACAGGAAGACC
TGCACCACCGTGGCCTTCACGCAAGTCAACTCGGAAGACAAGGGCGCTCTGGCTAAGCTG
GT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAAGATGCCCAAGGGGAAGAAGGCCAAGGGCAAGAAGGTGGCCCCGGCCCCTGCCGTC
GTGAAGAAGCAGGAGGCCAAGAAGGTGGTAAACCCCCTGTTTGAGAAAAGGCCGAAGAAT
TTTGGCATCGGACAGGACATCCAGCCCAAGAGGGACCTCACCCGTTTTGTCAAATGGCCC
CGCTACATCCGGCTGCAGCGGCAAAGGGCCATTCTCTATAAGCGGCTGAAGGTGCCTCCC
GCAATTAACCAGTTTACCCAGGCCTTGGACCGCCAAACAGCTACTCAGCTGCTTAAGCTG
GCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAGGTTGCTGGCCCGAGCT
GAGAAGAAGGCTGCAGGCAAAGGCGATGTCCCCACCAAGAGGCCGCCTGTCCTTCGAGCA
GGGGTGAATACTGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATCGCA
CACGACGTGGATCCCATTGAGCTGGTGGTCTTCCTGCCGGCCCTGTGTCGGAAGATGGGG
GTCCCCTACTGCATCATCAAGGGCAAGGCCAGGCTGGGGCGGCTGGTCCACAGGAAGACC
TGCACCACCGTGGCCTTCACGCAAGTCAACTCGGAAGACAAGGGCGCTCTGGCTAAGCTG
GT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57092007|ref|XP_537800.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57092007|ref|XP_537800.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               132-529, - strand, RNAz p=0.969929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-529, - strand, RNAz p=0.969929

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               132-662, gnl|bosTau2|chr14 (37044674-37045196)
               

               
               132-662, gnl|Hg17|chr18 (35169509-35168979)
               

               
               132-662, gnl|Mm7|chrX (161628698-161629228)
               


               
               248-599, gnl|bosTau2|chr12 (39471484-39471148)
               

               
               248-599, gnl|Mm7|chr19 (18282624-18282925)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-662, gnl|bosTau2|chr14 (37044674-37045196)
               

               
               132-662, gnl|Hg17|chr18 (35169509-35168979)
               

               
               132-662, gnl|Mm7|chrX (161628698-161629228)
               


               
               248-599, gnl|bosTau2|chr12 (39471484-39471148)
               

               
               248-599, gnl|Mm7|chr19 (18282624-18282925)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	132-662, gnl\|bosTau2\|chr14 (37044674-37045196)
	132-662, gnl\|Hg17\|chr18 (35169509-35168979)
	132-662, gnl\|Mm7\|chrX (161628698-161629228)

	248-599, gnl\|bosTau2\|chr12 (39471484-39471148)
	248-599, gnl\|Mm7\|chr19 (18282624-18282925)