Non-Coding RNA Search

rmed34c_c18.y1

Sequence:


               
               CAGAGCTGCAACTTCTATCCAAAGCCTGGGTTCCTTCCTGTGGTCGGGGACTGGGGCAGG
AGCAGGTGAAGGAGAACCAACTGTATTCATCTGTTCCTTTCAGTAGATGAAAATATTTAA
AGTTTCATCCCTGGGGTTTGCATTTCACAATCCCTGAGAGTCCTCTGTGGGAACCCAAGT
TCAGTGTCTCATACATCATTATTTTTAAACAATGAAAATGTTAAGAATTTTCAGTGCATA
TGCTAGAGATGATATATCAAAGGAATAAAGACTATTTCTATTTTGTTTATTTAAAAAAAA
AAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGCTGCAACTTCTATCCAAAGCCTGGGTTCCTTCCTGTGGTCGGGGACTGGGGCAGG
AGCAGGTGAAGGAGAACCAACTGTATTCATCTGTTCCTTTCAGTAGATGAAAATATTTAA
AGTTTCATCCCTGGGGTTTGCATTTCACAATCCCTGAGAGTCCTCTGTGGGAACCCAAGT
TCAGTGTCTCATACATCATTATTTTTAAACAATGAAAATGTTAAGAATTTTCAGTGCATA
TGCTAGAGATGATATATCAAAGGAATAAAGACTATTTCTATTTTGTTTATTTAAAAAAAA
AAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, - strand, RNAz p=0.8074

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.8074

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               2-264, gnl|bosTau2|chr11 (35473968-35473707)
               

               
               2-264, gnl|canFam2|chr17 (41464427-41464036)
               

               
               2-264, gnl|hg17|chr2 (86926030-86926409)
               

               
               2-264, gnl|Hg17|chr2 (86926300-86926048)
               

               
               2-264, gnl|loxAfr1|scaffold_57602 (7324-7718)
               

               
               2-264, gnl|oryCun1|scaffold_172507 (19376-19734)
               

               
               2-264, gnl|panTro1|chr12 (89804714-89805093)
               

               
               2-264, gnl|rheMac2|chr13 (88400067-88400443)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-264, gnl|bosTau2|chr11 (35473968-35473707)
               

               
               2-264, gnl|canFam2|chr17 (41464427-41464036)
               

               
               2-264, gnl|hg17|chr2 (86926030-86926409)
               

               
               2-264, gnl|Hg17|chr2 (86926300-86926048)
               

               
               2-264, gnl|loxAfr1|scaffold_57602 (7324-7718)
               

               
               2-264, gnl|oryCun1|scaffold_172507 (19376-19734)
               

               
               2-264, gnl|panTro1|chr12 (89804714-89805093)
               

               
               2-264, gnl|rheMac2|chr13 (88400067-88400443)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	2-264, gnl\|bosTau2\|chr11 (35473968-35473707)
	2-264, gnl\|canFam2\|chr17 (41464427-41464036)
	2-264, gnl\|hg17\|chr2 (86926030-86926409)
	2-264, gnl\|Hg17\|chr2 (86926300-86926048)
	2-264, gnl\|loxAfr1\|scaffold_57602 (7324-7718)
	2-264, gnl\|oryCun1\|scaffold_172507 (19376-19734)
	2-264, gnl\|panTro1\|chr12 (89804714-89805093)
	2-264, gnl\|rheMac2\|chr13 (88400067-88400443)