Non-Coding RNA Search

rmed34c_g14.y1

Sequence:


               
               GGACCATATTTCTTCACCTTGCTCCCCTGAGCACTTCGGGATGACCGAGTCCTGGCCCCT
CTGCTCAGCATCTCCCTTCCTGCCCCCCCACCCCCGGAGCCGCCGCCAGCCCTGGGCTGA
ATGGACTGACCTGCTCACCTCCCGCCGACAGCATTCCCCTTGGCCCTTTGCTGAGCCCCT
CTGCTCTACTCAAGGGCTACTTTAGGCCTCAGCGGAGGCCCATGGGGAATGGGTTTGCTC
TCTGGGGAAGGTGGCTTCTGGTGCTGTGGAGGCCCATTTCTTACAGGTGGGGCTCCTTTT
TTCCTAAGCTGTTTAAGCACAGGCTTGATGAGTTTGGTTTTTTAAAAATAATCTAGGGAA
TGATTAGTTTTAAATCTAATAATGAGAGGACTGGGTATTTCTGCTATCCTTCCAGGGTTA
AGACTCTGGATAAAGCAGACCCTTGGTCCTTTCGATACCTTTGGGATCTGCTTCTTTAAG
CACTTTGTACTTCTACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCATATTTCTTCACCTTGCTCCCCTGAGCACTTCGGGATGACCGAGTCCTGGCCCCT
CTGCTCAGCATCTCCCTTCCTGCCCCCCCACCCCCGGAGCCGCCGCCAGCCCTGGGCTGA
ATGGACTGACCTGCTCACCTCCCGCCGACAGCATTCCCCTTGGCCCTTTGCTGAGCCCCT
CTGCTCTACTCAAGGGCTACTTTAGGCCTCAGCGGAGGCCCATGGGGAATGGGTTTGCTC
TCTGGGGAAGGTGGCTTCTGGTGCTGTGGAGGCCCATTTCTTACAGGTGGGGCTCCTTTT
TTCCTAAGCTGTTTAAGCACAGGCTTGATGAGTTTGGTTTTTTAAAAATAATCTAGGGAA
TGATTAGTTTTAAATCTAATAATGAGAGGACTGGGTATTTCTGCTATCCTTCCAGGGTTA
AGACTCTGGATAAAGCAGACCCTTGGTCCTTTCGATACCTTTGGGATCTGCTTCTTTAAG
CACTTTGTACTTCTACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               149-300, + strand, RNAz p=0.990427

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-300, + strand, RNAz p=0.990427

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               125-275, - strand, RNAmicro p=0.99999
               

               
               154-232, + strand, RNAmicro p=0.993069

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               125-275, - strand, RNAmicro p=0.99999
               

               
               154-232, + strand, RNAmicro p=0.993069

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               195-300, LB0256.CR_L07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV876795.1|), 
blast E-value=3e-24, identity=90.91% 
               

               
               195-300, LB02932.CR_K16 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV923894.1|), 
blast E-value=3e-24, identity=90.91% 
               

               
               195-300, 990924BMGA003230HT BMGA Bos taurus cDNA, mRNA sequence 
(gb|DY049022.1|), blast E-value=3e-24, identity=90.91% 
               

               
               195-300, LB02938.CR_M04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351285.1|), 
blast E-value=3e-24, identity=90.91%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               195-300, LB0256.CR_L07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV876795.1|), 
blast E-value=3e-24, identity=90.91% 
               

               
               195-300, LB02932.CR_K16 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV923894.1|), 
blast E-value=3e-24, identity=90.91% 
               

               
               195-300, 990924BMGA003230HT BMGA Bos taurus cDNA, mRNA sequence 
(gb|DY049022.1|), blast E-value=3e-24, identity=90.91% 
               

               
               195-300, LB02938.CR_M04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351285.1|), 
blast E-value=3e-24, identity=90.91%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               110-498, gnl|bosTau2|chr19 (13373157-13373549)
               

               
               110-498, gnl|Hg17|chr17 (23696011-23696357)
               

               
               110-498, gnl|Mm7|chr11 (78606640-78606065)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-498, gnl|bosTau2|chr19 (13373157-13373549)
               

               
               110-498, gnl|Hg17|chr17 (23696011-23696357)
               

               
               110-498, gnl|Mm7|chr11 (78606640-78606065)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	125-275, - strand, RNAmicro p=0.99999
	154-232, + strand, RNAmicro p=0.993069

	195-300, LB0256.CR_L07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV876795.1\|), blast E-value=3e-24, identity=90.91%
	195-300, LB02932.CR_K16 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV923894.1\|), blast E-value=3e-24, identity=90.91%
	195-300, 990924BMGA003230HT BMGA Bos taurus cDNA, mRNA sequence (gb\|DY049022.1\|), blast E-value=3e-24, identity=90.91%
	195-300, LB02938.CR_M04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE351285.1\|), blast E-value=3e-24, identity=90.91%

	110-498, gnl\|bosTau2\|chr19 (13373157-13373549)
	110-498, gnl\|Hg17\|chr17 (23696011-23696357)
	110-498, gnl\|Mm7\|chr11 (78606640-78606065)