Non-Coding RNA Search

rmga03_o13.y1

Sequence:


               
               GGAAAGCTTCCTCGTAACATTTATATATAAATACTTAGGTCTCTCACTTAGTTTGAAAAT
CTTCTCATTTGAGGTGGGTAAACTTTTTCTTCCTCAAATGGTAAGGACATTTTGTACTGT
TTAAAATATAAAAAAGTTTTTCCCTAAATCTCATGTACTTTGTTGAGGCACTAACTTTCA
TGGCAGCAAATAAATGTGTCACAAAGTGAGTGGGGCCATAAAGTACAGTGATTTTTATTT
CTGTGTTGAATTGGTCTTGTGAGTTTTGAAGGGAAAAATACAGCGAGAACCACTGCTGTT
CTTTTGGAGATTTATTTGGGTCGTTTATGAGCAACCATTAAAAACATGTGGTTCTCTTTG
TTCAGTTCAGTACCAAGAACTGAAATCTTCCGTTGAACTATTTTTGCTGAAGGATTGGTG
ATTTTGGAAGAATATTCATAAAACAGTCTGAAGTAATTTTTCTTTTCTTGACTCCTGGAT
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGCTTCCTCGTAACATTTATATATAAATACTTAGGTCTCTCACTTAGTTTGAAAAT
CTTCTCATTTGAGGTGGGTAAACTTTTTCTTCCTCAAATGGTAAGGACATTTTGTACTGT
TTAAAATATAAAAAAGTTTTTCCCTAAATCTCATGTACTTTGTTGAGGCACTAACTTTCA
TGGCAGCAAATAAATGTGTCACAAAGTGAGTGGGGCCATAAAGTACAGTGATTTTTATTT
CTGTGTTGAATTGGTCTTGTGAGTTTTGAAGGGAAAAATACAGCGAGAACCACTGCTGTT
CTTTTGGAGATTTATTTGGGTCGTTTATGAGCAACCATTAAAAACATGTGGTTCTCTTTG
TTCAGTTCAGTACCAAGAACTGAAATCTTCCGTTGAACTATTTTTGCTGAAGGATTGGTG
ATTTTGGAAGAATATTCATAAAACAGTCTGAAGTAATTTTTCTTTTCTTGACTCCTGGAT
AA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               246-357, - strand, RNAz p=0.653896

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               246-357, - strand, RNAz p=0.653896

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               278-375, + strand, RNAmicro p=0.900456

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               278-375, + strand, RNAmicro p=0.900456

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-482, gnl|bosTau2|chr23 (17414484-17414003)
               

               
               1-482, gnl|Hg17|chr6 (44507199-44507683)
               

               
               1-482, gnl|Mm7|chr17 (43532659-43532146)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-482, gnl|bosTau2|chr23 (17414484-17414003)
               

               
               1-482, gnl|Hg17|chr6 (44507199-44507683)
               

               
               1-482, gnl|Mm7|chr17 (43532659-43532146)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mga (0.160205)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)

	1-482, gnl\|bosTau2\|chr23 (17414484-17414003)
	1-482, gnl\|Hg17\|chr6 (44507199-44507683)
	1-482, gnl\|Mm7\|chr17 (43532659-43532146)