Non-Coding RNA Search

rmga21_a9.y1

Sequence:


               
               AGGGGAAAAGTATAGTCGGCTTATTGAACATAGGATTTCCTTCTTATCAAGGACCTGTAC
AGGGGCTATTTGAGTTGAAATTATGAAAAGAAAAATATTCGTTCATCTTAATAGGGCTGG
CACATATAGTGAAAATAAGGAAGGAGACGTATAAATGTCCAGGACTTGGGAAATGCTGCT
ATAGGAAACGGTGAAGGATGAGGCTGGCAAAGGAGGTTAGAATAATATTGTGGAGAGTCT
TGAATGCCAGGCTGAAGAAGTTTGTACTTTAGCAATGTGTTGCTTGTATTAAAGTAGTTT
TTAAAAATTTCAAGCATACAGAAATATAGAGGGTAATGTAATAAATACCATGTGCTACCA
TTAAGCATGAGGAAAAAAATCCCACATATGTGTAATCAAAGCACATTTTCCTTCCCCAAT
CATATTCCCGTATTTCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGAAAAGTATAGTCGGCTTATTGAACATAGGATTTCCTTCTTATCAAGGACCTGTAC
AGGGGCTATTTGAGTTGAAATTATGAAAAGAAAAATATTCGTTCATCTTAATAGGGCTGG
CACATATAGTGAAAATAAGGAAGGAGACGTATAAATGTCCAGGACTTGGGAAATGCTGCT
ATAGGAAACGGTGAAGGATGAGGCTGGCAAAGGAGGTTAGAATAATATTGTGGAGAGTCT
TGAATGCCAGGCTGAAGAAGTTTGTACTTTAGCAATGTGTTGCTTGTATTAAAGTAGTTT
TTAAAAATTTCAAGCATACAGAAATATAGAGGGTAATGTAATAAATACCATGTGCTACCA
TTAAGCATGAGGAAAAAAATCCCACATATGTGTAATCAAAGCACATTTTCCTTCCCCAAT
CATATTCCCGTATTTCCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               333-440, - strand, RNAz p=0.984847

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-440, - strand, RNAz p=0.984847

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               179-440, gnl|bosTau2|chr3 (56105795-56105533)
               

               
               179-440, gnl|canFam2|chr5 (50294343-50294049)
               

               
               179-440, gnl|dasNov1|scaffold_28021 (792-494)
               

               
               179-440, gnl|echTel1|scaffold_323172 (27722-28047)
               

               
               179-440, gnl|hg17|chr1 (63022081-63022370)
               

               
               179-440, gnl|Hg17|chr1 (63022155-63022410)
               

               
               179-440, gnl|mm7|chr4 (98630229-98630529)
               

               
               179-440, gnl|Mm7|chr4 (98630323-98630584)
               

               
               179-440, gnl|panTro1|chr1 (61356772-61357061)
               

               
               179-440, gnl|rheMac2|chr1 (65635507-65635815)
               

               
               179-440, gnl|rn3|chr5 (119881024-119881325)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-440, gnl|bosTau2|chr3 (56105795-56105533)
               

               
               179-440, gnl|canFam2|chr5 (50294343-50294049)
               

               
               179-440, gnl|dasNov1|scaffold_28021 (792-494)
               

               
               179-440, gnl|echTel1|scaffold_323172 (27722-28047)
               

               
               179-440, gnl|hg17|chr1 (63022081-63022370)
               

               
               179-440, gnl|Hg17|chr1 (63022155-63022410)
               

               
               179-440, gnl|mm7|chr4 (98630229-98630529)
               

               
               179-440, gnl|Mm7|chr4 (98630323-98630584)
               

               
               179-440, gnl|panTro1|chr1 (61356772-61357061)
               

               
               179-440, gnl|rheMac2|chr1 (65635507-65635815)
               

               
               179-440, gnl|rn3|chr5 (119881024-119881325)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mga (0.160205)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)

	179-440, gnl\|bosTau2\|chr3 (56105795-56105533)
	179-440, gnl\|canFam2\|chr5 (50294343-50294049)
	179-440, gnl\|dasNov1\|scaffold_28021 (792-494)
	179-440, gnl\|echTel1\|scaffold_323172 (27722-28047)
	179-440, gnl\|hg17\|chr1 (63022081-63022370)
	179-440, gnl\|Hg17\|chr1 (63022155-63022410)
	179-440, gnl\|mm7\|chr4 (98630229-98630529)
	179-440, gnl\|Mm7\|chr4 (98630323-98630584)
	179-440, gnl\|panTro1\|chr1 (61356772-61357061)
	179-440, gnl\|rheMac2\|chr1 (65635507-65635815)
	179-440, gnl\|rn3\|chr5 (119881024-119881325)