Non-Coding RNA Search

rmga39_g10.y1

Sequence:


               
               GACAACTCTGCCTGCAAGAGTGTTCTCTGAAATTGCACCACCTGTTTGCAAAAGTGCTCT
CCAAGCCCATTGCACAACATGGCCCTTGTGGTTTCACACAGATTTTCCAGAACAATTCTG
GGAAGGAACACGCATGTATCTATGAATGACCGGGTGTGCATGCGTGTGAGGGATAGAGTG
AGTGTGTGCAGAGGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAACTCTGCCTGCAAGAGTGTTCTCTGAAATTGCACCACCTGTTTGCAAAAGTGCTCT
CCAAGCCCATTGCACAACATGGCCCTTGTGGTTTCACACAGATTTTCCAGAACAATTCTG
GGAAGGAACACGCATGTATCTATGAATGACCGGGTGTGCATGCGTGTGAGGGATAGAGTG
AGTGTGTGCAGAGGCCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               27-195, - strand, RNAz p=0.976338
               

               
               50-195, + strand, RNAz p=0.878091

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               27-195, - strand, RNAz p=0.976338
               

               
               50-195, + strand, RNAz p=0.878091

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               12-195, gnl|bosTau2|chr7 (16733786-16733957)
               

               
               12-195, gnl|canFam2|chr20 (3524900-3525034)
               

               
               12-195, gnl|dasNov1|scaffold_9940 (13930-13795)
               

               
               12-195, gnl|echTel1|scaffold_307678 (8423-8289)
               

               
               12-195, gnl|galGal2|chr12 (10653113-10653256)
               

               
               12-195, gnl|hg17|chr3 (127554619-127554754)
               

               
               12-195, gnl|Hg17|chr3 (127554637-127554819)
               

               
               12-195, gnl|loxAfr1|scaffold_23414 (24263-24398)
               

               
               12-195, gnl|mm7|chr6 (90544986-90544848)
               

               
               12-195, gnl|Mm7|chr6 (90544966-90544775)
               

               
               12-195, gnl|monDom2|scaffold_1111 (6145-6006)
               

               
               12-195, gnl|oryCun1|scaffold_211768 (2760-2893)
               

               
               12-195, gnl|panTro1|chr2 (129404873-129405008)
               

               
               12-195, gnl|rheMac2|chr2 (46130309-46130444)
               

               
               12-195, gnl|rn3|chr4 (124962551-124962416)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-195, gnl|bosTau2|chr7 (16733786-16733957)
               

               
               12-195, gnl|canFam2|chr20 (3524900-3525034)
               

               
               12-195, gnl|dasNov1|scaffold_9940 (13930-13795)
               

               
               12-195, gnl|echTel1|scaffold_307678 (8423-8289)
               

               
               12-195, gnl|galGal2|chr12 (10653113-10653256)
               

               
               12-195, gnl|hg17|chr3 (127554619-127554754)
               

               
               12-195, gnl|Hg17|chr3 (127554637-127554819)
               

               
               12-195, gnl|loxAfr1|scaffold_23414 (24263-24398)
               

               
               12-195, gnl|mm7|chr6 (90544986-90544848)
               

               
               12-195, gnl|Mm7|chr6 (90544966-90544775)
               

               
               12-195, gnl|monDom2|scaffold_1111 (6145-6006)
               

               
               12-195, gnl|oryCun1|scaffold_211768 (2760-2893)
               

               
               12-195, gnl|panTro1|chr2 (129404873-129405008)
               

               
               12-195, gnl|rheMac2|chr2 (46130309-46130444)
               

               
               12-195, gnl|rn3|chr4 (124962551-124962416)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               mga (0.160205)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)

	27-195, - strand, RNAz p=0.976338
	50-195, + strand, RNAz p=0.878091

	12-195, gnl\|bosTau2\|chr7 (16733786-16733957)
	12-195, gnl\|canFam2\|chr20 (3524900-3525034)
	12-195, gnl\|dasNov1\|scaffold_9940 (13930-13795)
	12-195, gnl\|echTel1\|scaffold_307678 (8423-8289)
	12-195, gnl\|galGal2\|chr12 (10653113-10653256)
	12-195, gnl\|hg17\|chr3 (127554619-127554754)
	12-195, gnl\|Hg17\|chr3 (127554637-127554819)
	12-195, gnl\|loxAfr1\|scaffold_23414 (24263-24398)
	12-195, gnl\|mm7\|chr6 (90544986-90544848)
	12-195, gnl\|Mm7\|chr6 (90544966-90544775)
	12-195, gnl\|monDom2\|scaffold_1111 (6145-6006)
	12-195, gnl\|oryCun1\|scaffold_211768 (2760-2893)
	12-195, gnl\|panTro1\|chr2 (129404873-129405008)
	12-195, gnl\|rheMac2\|chr2 (46130309-46130444)
	12-195, gnl\|rn3\|chr4 (124962551-124962416)