Non-Coding RNA Search

rmgm019_a21.y1

Sequence:


               
               GAGAAGAACCCGTAGAAATGCCTTCGGAAAAAGAGTGTGGTAAAACCAATGCAGATAGGT
CTGTAGAGAGCGTGTCACCGACTCTTTGCTCTGGTGAAAGTAATCAAGATGACTGTGGTC
TTTCAAATACTGTGCCACTTCAAAATGAAAAATCTTCATCTGGTGAAATACTGGAAGAAA
GAGCAGCAGTAAAGAAAAAAGCCTTTGGAAAGCAAAAAAGCAAATCACCTCTGGAAAAGC
TCCCAAAACATGAGCTCTCTTTTGTTGGTGACTGGCCAGTTGATAAGACTATTGGTCAGA
GGACGAAAAGGAACCGAAAAACTGAGAAAGCTTCATGTGTACAAGGTGACAAAAAGTATA
ATCGCCCTCAGTCACATAAAATATCAGATCATAGTTCATCTGTGAGTATAGATTGTATTC
AACCACAGGCATCTCCACATGAAAACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAGAACCCGTAGAAATGCCTTCGGAAAAAGAGTGTGGTAAAACCAATGCAGATAGGT
CTGTAGAGAGCGTGTCACCGACTCTTTGCTCTGGTGAAAGTAATCAAGATGACTGTGGTC
TTTCAAATACTGTGCCACTTCAAAATGAAAAATCTTCATCTGGTGAAATACTGGAAGAAA
GAGCAGCAGTAAAGAAAAAAGCCTTTGGAAAGCAAAAAAGCAAATCACCTCTGGAAAAGC
TCCCAAAACATGAGCTCTCTTTTGTTGGTGACTGGCCAGTTGATAAGACTATTGGTCAGA
GGACGAAAAGGAACCGAAAAACTGAGAAAGCTTCATGTGTACAAGGTGACAAAAAGTATA
ATCGCCCTCAGTCACATAAAATATCAGATCATAGTTCATCTGTGAGTATAGATTGTATTC
AACCACAGGCATCTCCACATGAAAACGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-317, + strand, RNAz p=0.680304

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-317, + strand, RNAz p=0.680304

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-448, gnl|bosTau2|chr6 (32472102-32472548)
               

               
               2-448, gnl|Hg17|chr4 (39944397-39944840)
               

               
               2-448, gnl|Mm7|chr5 (65161280-65161722)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-448, gnl|bosTau2|chr6 (32472102-32472548)
               

               
               2-448, gnl|Hg17|chr4 (39944397-39944840)
               

               
               2-448, gnl|Mm7|chr5 (65161280-65161722)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mgm (0.180343)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)

	2-448, gnl\|bosTau2\|chr6 (32472102-32472548)
	2-448, gnl\|Hg17\|chr4 (39944397-39944840)
	2-448, gnl\|Mm7\|chr5 (65161280-65161722)