Non-Coding RNA Search

rmgp009_i16.y1

Sequence:


               
               TGTGCTTTCTATTTTAAAGTATCTCTCTGCATCTTTCCAACATTTTTTTCTAGGCTTCAG
GCTGCTGAATTAGGCTGCTGTATCTCCAGTCAGCAAAATTCCATTGGTGTGTCTGTCTAC
ACAAGATACAACACTTTATTCTACCATAGGAAGAATTTTAAGTCATTCTTCTATTTTTCT
TGCCTACAACTCTACCTTCCTTTTTAGAAATGCAATTTTGGGAATGACCGAGTGAAAGGA
TTTCCTTTGAAAATTAGTGTATGGTTTCCAAGTATTCTGATTTATTTCTTGCCACAATTT
TCTCCACTATTAACAAAGACCATAAAAATTACAAACACTAAAAACTGCTGCTCCTGATAA
AGGTTTGTTGCAGAAATTTCTCTTCCTCTCATAATAAAATTAGTGATGTaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCTTTCTATTTTAAAGTATCTCTCTGCATCTTTCCAACATTTTTTTCTAGGCTTCAG
GCTGCTGAATTAGGCTGCTGTATCTCCAGTCAGCAAAATTCCATTGGTGTGTCTGTCTAC
ACAAGATACAACACTTTATTCTACCATAGGAAGAATTTTAAGTCATTCTTCTATTTTTCT
TGCCTACAACTCTACCTTCCTTTTTAGAAATGCAATTTTGGGAATGACCGAGTGAAAGGA
TTTCCTTTGAAAATTAGTGTATGGTTTCCAAGTATTCTGATTTATTTCTTGCCACAATTT
TCTCCACTATTAACAAAGACCATAAAAATTACAAACACTAAAAACTGCTGCTCCTGATAA
AGGTTTGTTGCAGAAATTTCTCTTCCTCTCATAATAAAATTAGTGATGTaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               34-151, - strand, RNAz p=0.886996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               34-151, - strand, RNAz p=0.886996

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-219, gnl|bosTau2|chr24 (24090928-24091144)
               

               
               1-219, gnl|canFam2|chr9 (60707524-60707179)
               

               
               1-219, gnl|dasNov1|scaffold_77703 (5074-5386)
               

               
               1-219, gnl|hg17|chr9 (125642937-125643253)
               

               
               1-219, gnl|Hg17|chr9 (125643010-125643245)
               

               
               1-219, gnl|mm7|chr2 (34331538-34331239)
               

               
               1-219, gnl|oryCun1|scaffold_178150 (15076-14739)
               

               
               1-219, gnl|panTro1|chr11 (110443836-110444155)
               

               
               1-219, gnl|rheMac2|chr15 (100809530-100809207)
               

               
               1-219, gnl|rn3|chr3 (13255623-13255338)
               


               
               278-410, gnl|bosTau2|chr24 (24091455-24091587)
               

               
               278-410, gnl|canFam2|chr9 (60707178-60706945)
               

               
               278-410, gnl|hg17|chr9 (125643254-125643498)
               

               
               278-410, gnl|Hg17|chr9 (125643323-125643468)
               

               
               278-410, gnl|mm7|chr2 (34331238-34330996)
               

               
               278-410, gnl|Mm7|chr2 (34331167-34331022)
               

               
               278-410, gnl|oryCun1|scaffold_178150 (14738-14496)
               

               
               278-410, gnl|panTro1|chr11 (110444156-110444401)
               

               
               278-410, gnl|rheMac2|chr15 (100809206-100808964)
               

               
               278-410, gnl|rn3|chr3 (13255337-13255105)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chr24 (24090928-24091144)
               

               
               1-219, gnl|canFam2|chr9 (60707524-60707179)
               

               
               1-219, gnl|dasNov1|scaffold_77703 (5074-5386)
               

               
               1-219, gnl|hg17|chr9 (125642937-125643253)
               

               
               1-219, gnl|Hg17|chr9 (125643010-125643245)
               

               
               1-219, gnl|mm7|chr2 (34331538-34331239)
               

               
               1-219, gnl|oryCun1|scaffold_178150 (15076-14739)
               

               
               1-219, gnl|panTro1|chr11 (110443836-110444155)
               

               
               1-219, gnl|rheMac2|chr15 (100809530-100809207)
               

               
               1-219, gnl|rn3|chr3 (13255623-13255338)
               


               
               278-410, gnl|bosTau2|chr24 (24091455-24091587)
               

               
               278-410, gnl|canFam2|chr9 (60707178-60706945)
               

               
               278-410, gnl|hg17|chr9 (125643254-125643498)
               

               
               278-410, gnl|Hg17|chr9 (125643323-125643468)
               

               
               278-410, gnl|mm7|chr2 (34331238-34330996)
               

               
               278-410, gnl|Mm7|chr2 (34331167-34331022)
               

               
               278-410, gnl|oryCun1|scaffold_178150 (14738-14496)
               

               
               278-410, gnl|panTro1|chr11 (110444156-110444401)
               

               
               278-410, gnl|rheMac2|chr15 (100809206-100808964)
               

               
               278-410, gnl|rn3|chr3 (13255337-13255105)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               mgp (0.230681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)

	1-219, gnl\|bosTau2\|chr24 (24090928-24091144)
	1-219, gnl\|canFam2\|chr9 (60707524-60707179)
	1-219, gnl\|dasNov1\|scaffold_77703 (5074-5386)
	1-219, gnl\|hg17\|chr9 (125642937-125643253)
	1-219, gnl\|Hg17\|chr9 (125643010-125643245)
	1-219, gnl\|mm7\|chr2 (34331538-34331239)
	1-219, gnl\|oryCun1\|scaffold_178150 (15076-14739)
	1-219, gnl\|panTro1\|chr11 (110443836-110444155)
	1-219, gnl\|rheMac2\|chr15 (100809530-100809207)
	1-219, gnl\|rn3\|chr3 (13255623-13255338)

	278-410, gnl\|bosTau2\|chr24 (24091455-24091587)
	278-410, gnl\|canFam2\|chr9 (60707178-60706945)
	278-410, gnl\|hg17\|chr9 (125643254-125643498)
	278-410, gnl\|Hg17\|chr9 (125643323-125643468)
	278-410, gnl\|mm7\|chr2 (34331238-34330996)
	278-410, gnl\|Mm7\|chr2 (34331167-34331022)
	278-410, gnl\|oryCun1\|scaffold_178150 (14738-14496)
	278-410, gnl\|panTro1\|chr11 (110444156-110444401)
	278-410, gnl\|rheMac2\|chr15 (100809206-100808964)
	278-410, gnl\|rn3\|chr3 (13255337-13255105)