Non-Coding RNA Search

rmgp015_p24.y1

Sequence:


               
               CTGCCAGTCGTCCAACTGGTACATCTGATTATTTTTAAGGAAGCCTCACAGAGCTGAATG
GGCAGTGTAATCAATAATTTAAAAGACAGAAGTGTCCTTAGATCCTTTATAAAGGAGCTC
AAAGCCAGAGCAGCTCATGGTGATGATATTTCACATCACCAGACACACCAGGCAACAGAA
GATGAAGCACAACCACTGTAGCAAAATACCTTGACTGCTTGTGAGACCAGTAGCGTTGCA
GGCCAAACTGTACTGTATTTCCTTCTCAGAACCTCAAGGAAGCACATGTGCTACCCACAA
CACCTCATTCTTACCCAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCAGTCGTCCAACTGGTACATCTGATTATTTTTAAGGAAGCCTCACAGAGCTGAATG
GGCAGTGTAATCAATAATTTAAAAGACAGAAGTGTCCTTAGATCCTTTATAAAGGAGCTC
AAAGCCAGAGCAGCTCATGGTGATGATATTTCACATCACCAGACACACCAGGCAACAGAA
GATGAAGCACAACCACTGTAGCAAAATACCTTGACTGCTTGTGAGACCAGTAGCGTTGCA
GGCCAAACTGTACTGTATTTCCTTCTCAGAACCTCAAGGAAGCACATGTGCTACCCACAA
CACCTCATTCTTACCCAGGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-111, - strand, RNAz p=0.508536
               

               
               197-316, - strand, RNAz p=0.809407

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-111, - strand, RNAz p=0.508536
               

               
               197-316, - strand, RNAz p=0.809407

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-320, gnl|bosTau2|chr7 (22842542-22842239)
               

               
               1-320, gnl|canFam2|chr11 (20317157-20317711)
               

               
               1-320, gnl|dasNov1|scaffold_37349 (39683-40239)
               

               
               1-320, gnl|echTel1|scaffold_316435 (67004-67579)
               

               
               1-320, gnl|galGal2|chrW (3930511-3929915)
               

               
               1-320, gnl|hg17|chr5 (127622088-127622643)
               

               
               1-320, gnl|Hg17|chr5 (127622497-127622175)
               

               
               1-320, gnl|loxAfr1|scaffold_31275 (18220-17660)
               

               
               1-320, gnl|mm7|chr18 (58388524-58389077)
               

               
               1-320, gnl|Mm7|chr18 (58388927-58388612)
               

               
               1-320, gnl|monDom2|scaffold_60 (1979550-1980058)
               

               
               1-320, gnl|panTro1|chr4 (133971444-133971999)
               

               
               1-320, gnl|rheMac2|chr6 (124665752-124666307)
               

               
               1-320, gnl|rn3|chr18 (53946009-53946564)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-320, gnl|bosTau2|chr7 (22842542-22842239)
               

               
               1-320, gnl|canFam2|chr11 (20317157-20317711)
               

               
               1-320, gnl|dasNov1|scaffold_37349 (39683-40239)
               

               
               1-320, gnl|echTel1|scaffold_316435 (67004-67579)
               

               
               1-320, gnl|galGal2|chrW (3930511-3929915)
               

               
               1-320, gnl|hg17|chr5 (127622088-127622643)
               

               
               1-320, gnl|Hg17|chr5 (127622497-127622175)
               

               
               1-320, gnl|loxAfr1|scaffold_31275 (18220-17660)
               

               
               1-320, gnl|mm7|chr18 (58388524-58389077)
               

               
               1-320, gnl|Mm7|chr18 (58388927-58388612)
               

               
               1-320, gnl|monDom2|scaffold_60 (1979550-1980058)
               

               
               1-320, gnl|panTro1|chr4 (133971444-133971999)
               

               
               1-320, gnl|rheMac2|chr6 (124665752-124666307)
               

               
               1-320, gnl|rn3|chr18 (53946009-53946564)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               mgp (0.230681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)

	3-111, - strand, RNAz p=0.508536
	197-316, - strand, RNAz p=0.809407

	1-320, gnl\|bosTau2\|chr7 (22842542-22842239)
	1-320, gnl\|canFam2\|chr11 (20317157-20317711)
	1-320, gnl\|dasNov1\|scaffold_37349 (39683-40239)
	1-320, gnl\|echTel1\|scaffold_316435 (67004-67579)
	1-320, gnl\|galGal2\|chrW (3930511-3929915)
	1-320, gnl\|hg17\|chr5 (127622088-127622643)
	1-320, gnl\|Hg17\|chr5 (127622497-127622175)
	1-320, gnl\|loxAfr1\|scaffold_31275 (18220-17660)
	1-320, gnl\|mm7\|chr18 (58388524-58389077)
	1-320, gnl\|Mm7\|chr18 (58388927-58388612)
	1-320, gnl\|monDom2\|scaffold_60 (1979550-1980058)
	1-320, gnl\|panTro1\|chr4 (133971444-133971999)
	1-320, gnl\|rheMac2\|chr6 (124665752-124666307)
	1-320, gnl\|rn3\|chr18 (53946009-53946564)