Non-Coding RNA Search

rmgp017_o3.y1

Sequence:


               
               GAAAATAGTATAATGAACCCCTAAGGGTTTATCACCCCGTTCAATGATTGTAACATTTTT
CCTTTAATAAATGCTTATGAAACTTGTTAAATTTTTGATAAACTTAAGAAAATATATGAA
ATATTCAGTGGCTTTTGCACACAATGATGTTGACATCATCTTGCCTTTGCAGAGTGATGA
ATGTTCTGACTTCTAGAGAAAATATTAAAACTTGAAGTTTTTCTTGGGGCCCTCTGAGAA
TTTTCAAAAAGCCAATTTTACAAAGAGAACCTGTGAGAATTCCACAAATATTTGTAACAT
AAAAAATAGAGACAAACCAGCCGCTCTTTATTTATAAACAATACGTGCTTTCATATCATT
GTTGAAACTAAAGTACATAATTTTCAGTTATGCATAATAAAATATGTAATTAAGCAACAT
TCCATGGTGGATTAAAGAATTAAAAGCTTCAGGTGCAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATAGTATAATGAACCCCTAAGGGTTTATCACCCCGTTCAATGATTGTAACATTTTT
CCTTTAATAAATGCTTATGAAACTTGTTAAATTTTTGATAAACTTAAGAAAATATATGAA
ATATTCAGTGGCTTTTGCACACAATGATGTTGACATCATCTTGCCTTTGCAGAGTGATGA
ATGTTCTGACTTCTAGAGAAAATATTAAAACTTGAAGTTTTTCTTGGGGCCCTCTGAGAA
TTTTCAAAAAGCCAATTTTACAAAGAGAACCTGTGAGAATTCCACAAATATTTGTAACAT
AAAAAATAGAGACAAACCAGCCGCTCTTTATTTATAAACAATACGTGCTTTCATATCATT
GTTGAAACTAAAGTACATAATTTTCAGTTATGCATAATAAAATATGTAATTAAGCAACAT
TCCATGGTGGATTAAAGAATTAAAAGCTTCAGGTGCAGAAAAAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               4-465, gnl|bosTau2|chr1 (101160394-101159931)
               

               
               4-465, gnl|canFam2|chr23 (27749870-27748841)
               

               
               4-465, gnl|dasNov1|scaffold_5740 (8017-7025)
               

               
               4-465, gnl|echTel1|scaffold_320275 (98006-96968)
               

               
               4-465, gnl|hg17|chr3 (18359483-18360510)
               

               
               4-465, gnl|Hg17|chr3 (18360637-18360188)
               

               
               4-465, gnl|loxAfr1|scaffold_417 (26855-27866)
               

               
               4-465, gnl|mm7|chr17 (49883874-49884784)
               

               
               4-465, gnl|Mm7|chr17 (49884912-49884458)
               

               
               4-465, gnl|monDom2|scaffold_7 (74055642-74056827)
               

               
               4-465, gnl|oryCun1|scaffold_215236 (170-1158)
               

               
               4-465, gnl|panTro1|chr2 (19058155-19059179)
               

               
               4-465, gnl|rheMac2|chr2 (160627216-160628243)
               

               
               4-465, gnl|rn3|chr9 (3396880-3395988)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-465, gnl|bosTau2|chr1 (101160394-101159931)
               

               
               4-465, gnl|canFam2|chr23 (27749870-27748841)
               

               
               4-465, gnl|dasNov1|scaffold_5740 (8017-7025)
               

               
               4-465, gnl|echTel1|scaffold_320275 (98006-96968)
               

               
               4-465, gnl|hg17|chr3 (18359483-18360510)
               

               
               4-465, gnl|Hg17|chr3 (18360637-18360188)
               

               
               4-465, gnl|loxAfr1|scaffold_417 (26855-27866)
               

               
               4-465, gnl|mm7|chr17 (49883874-49884784)
               

               
               4-465, gnl|Mm7|chr17 (49884912-49884458)
               

               
               4-465, gnl|monDom2|scaffold_7 (74055642-74056827)
               

               
               4-465, gnl|oryCun1|scaffold_215236 (170-1158)
               

               
               4-465, gnl|panTro1|chr2 (19058155-19059179)
               

               
               4-465, gnl|rheMac2|chr2 (160627216-160628243)
               

               
               4-465, gnl|rn3|chr9 (3396880-3395988)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mgp (0.230681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)

	4-465, gnl\|bosTau2\|chr1 (101160394-101159931)
	4-465, gnl\|canFam2\|chr23 (27749870-27748841)
	4-465, gnl\|dasNov1\|scaffold_5740 (8017-7025)
	4-465, gnl\|echTel1\|scaffold_320275 (98006-96968)
	4-465, gnl\|hg17\|chr3 (18359483-18360510)
	4-465, gnl\|Hg17\|chr3 (18360637-18360188)
	4-465, gnl\|loxAfr1\|scaffold_417 (26855-27866)
	4-465, gnl\|mm7\|chr17 (49883874-49884784)
	4-465, gnl\|Mm7\|chr17 (49884912-49884458)
	4-465, gnl\|monDom2\|scaffold_7 (74055642-74056827)
	4-465, gnl\|oryCun1\|scaffold_215236 (170-1158)
	4-465, gnl\|panTro1\|chr2 (19058155-19059179)
	4-465, gnl\|rheMac2\|chr2 (160627216-160628243)
	4-465, gnl\|rn3\|chr9 (3396880-3395988)