Non-Coding RNA Search

rmgp22_g24.y1

Sequence:


               
               TTCTCGGCTCTGCAGGACTCGGAGCTCTTCGACAGCAGCGTGGAGGCCATCGTCAATGCC
ATCGCACAGCCCGATGCCCAGAGGTGAGCCGGTCCCCGCTTCCCAGACAGGCAGTCTGCT
TGGCCAGCCACCCATCCGTCCATCCGTCTGCTCCGTAAGCCGTAATTGAGTGCCTACTGC
GTGCCTGGTCCTGTGCTGGAATGACAGCAAGGAGCCAGACGAGACATGGATCCTGTCCTT
AGGGTTCAGAGAGGGAGAAAGACTTTAAGCAACTAAGCATCCCACACATCACTCAATGAA
AACATGCGGCTCTCTCCTCTCTGCCTCCCGGTCAGTCAGTCATCGAGTCCTGGCTGTTCT
GCTCTGACCACGCTGTGTATCTCTTTCTCCCCTTTCCTCCGCCTCCGCCCTCGTCCAGCC
TCTGTCCCCATCTCTCTCCCCGGATGCCTGAGGGGCTTCCCCGCCAGCCCCCTGGTTTTC
ACCCTTAGACCTTTCATTGTCCACCCAGCGGCCAGCAATGGTCTTTTAAAAAACGAGGAC
CTGACTGTTCTGCTCGGAACCCTCCGGAGGCTCCTCACGGCTCTTAGGATAAAGTTCAGA
ATCCCGAATGTGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTCGGCTCTGCAGGACTCGGAGCTCTTCGACAGCAGCGTGGAGGCCATCGTCAATGCC
ATCGCACAGCCCGATGCCCAGAGGTGAGCCGGTCCCCGCTTCCCAGACAGGCAGTCTGCT
TGGCCAGCCACCCATCCGTCCATCCGTCTGCTCCGTAAGCCGTAATTGAGTGCCTACTGC
GTGCCTGGTCCTGTGCTGGAATGACAGCAAGGAGCCAGACGAGACATGGATCCTGTCCTT
AGGGTTCAGAGAGGGAGAAAGACTTTAAGCAACTAAGCATCCCACACATCACTCAATGAA
AACATGCGGCTCTCTCCTCTCTGCCTCCCGGTCAGTCAGTCATCGAGTCCTGGCTGTTCT
GCTCTGACCACGCTGTGTATCTCTTTCTCCCCTTTCCTCCGCCTCCGCCCTCGTCCAGCC
TCTGTCCCCATCTCTCTCCCCGGATGCCTGAGGGGCTTCCCCGCCAGCCCCCTGGTTTTC
ACCCTTAGACCTTTCATTGTCCACCCAGCGGCCAGCAATGGTCTTTTAAAAAACGAGGAC
CTGACTGTTCTGCTCGGAACCCTCCGGAGGCTCCTCACGGCTCTTAGGATAAAGTTCAGA
ATCCCGAATGTGACCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               117-275, - strand, RNAz p=0.926627

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-275, - strand, RNAz p=0.926627

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-613, gnl|bosTau2|chr3 (71007406-71006799)
               

               
               1-613, gnl|Hg17|chr1 (44084836-44085415)
               

               
               1-613, gnl|Mm7|chr4 (117288294-117287740)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-613, gnl|bosTau2|chr3 (71007406-71006799)
               

               
               1-613, gnl|Hg17|chr1 (44084836-44085415)
               

               
               1-613, gnl|Mm7|chr4 (117288294-117287740)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mgp (0.230681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)

	1-613, gnl\|bosTau2\|chr3 (71007406-71006799)
	1-613, gnl\|Hg17\|chr1 (44084836-44085415)
	1-613, gnl\|Mm7\|chr4 (117288294-117287740)