rmgp35_e24.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTGGTGCAGGGGTTTATAAACCAGACAGTCTGACTCCAGACTTGTGGCCCATCACTGC TAAGAAGTCACTGTTCCAGAGGAGAAGCCAGACTTGTAAACAGATAAATATAATTCAAAG AGGCATTTGTCTTATGGACTGCTGAAACTGAAAATATACTTAAAAGACTGAAATTGAGGT TAGAAGAATCGAAAAGATTGACCAATATGAATTTCTAGCTATGTCTCTACTTTTTCTTTA TGGCAAGAAGAACAGCAAACTGATGAATTGATGGAAAATGAGCTTTAGCAAATATGTGGA CAATAAAATTGAAAGGAGTTACTCAGTGCTCACCTTCCAAAGAAATCCTGAGGAAATACC TGCTTTTTCAGTGAACTCTCTGAATGTACTCTCTCTTGACCTTGAATTCAGGGGAAATAA ATATATTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTGGTGCAGGGGTTTATAAACCAGACAGTCTGACTCCAGACTTGTGGCCCATCACTGC TAAGAAGTCACTGTTCCAGAGGAGAAGCCAGACTTGTAAACAGATAAATATAATTCAAAG AGGCATTTGTCTTATGGACTGCTGAAACTGAAAATATACTTAAAAGACTGAAATTGAGGT TAGAAGAATCGAAAAGATTGACCAATATGAATTTCTAGCTATGTCTCTACTTTTTCTTTA TGGCAAGAAGAACAGCAAACTGATGAATTGATGGAAAATGAGCTTTAGCAAATATGTGGA CAATAAAATTGAAAGGAGTTACTCAGTGCTCACCTTCCAAAGAAATCCTGAGGAAATACC TGCTTTTTCAGTGAACTCTCTGAATGTACTCTCTCTTGACCTTGAATTCAGGGGAAATAA ATATATTTG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-123, + strand, RNAz p=0.607559 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-123, + strand, RNAz p=0.607559 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-123, gnl|bosTau2|chr1 (24991350-24991472) | |
| 1-123, gnl|canFam2|chr33 (14012931-14013355) | |
| 1-123, gnl|dasNov1|scaffold_38096 (10977-11377) | |
| 1-123, gnl|echTel1|scaffold_271982 (6823-6391) | |
| 1-123, gnl|hg17|chr3 (106556923-106557342) | |
| 1-123, gnl|Hg17|chr3 (106556925-106557045) | |
| 1-123, gnl|mm7|chr16 (52299174-52298770) | |
| 1-123, gnl|Mm7|chr16 (52299170-52299050) | |
| 1-123, gnl|oryCun1|scaffold_212269 (185637-185224) | |
| 1-123, gnl|panTro1|chr2 (108040622-108041041) | |
| 1-123, gnl|rheMac2|chr2 (25486710-25487129) | |
| 1-123, gnl|rn3|chr11 (49462809-49463213) | |
| 173-383, gnl|bosTau2|chr1 (24995521-24995737) | |
| 173-383, gnl|canFam2|chr33 (14014844-14015067) | |
| 173-383, gnl|echTel1|scaffold_271982 (2897-2659) | |
| 173-383, gnl|hg17|chr3 (106559076-106559298) | |
| 173-383, gnl|Hg17|chr3 (106559122-106559352) | |
| 173-383, gnl|loxAfr1|scaffold_70968 (5621-5865) | |
| 173-383, gnl|mm7|chr16 (52296280-52296024) | |
| 173-383, gnl|Mm7|chr16 (52296232-52295972) | |
| 173-383, gnl|monDom2|scaffold_50 (3150264-3150004) | |
| 173-383, gnl|oryCun1|scaffold_212269 (183478-183231) | |
| 173-383, gnl|panTro1|chr2 (108042773-108042995) | |
| 173-383, gnl|rheMac2|chr2 (25488852-25489074) | |
| 173-383, gnl|rn3|chr11 (49470825-49471078) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-123, gnl|bosTau2|chr1 (24991350-24991472) | |
| 1-123, gnl|canFam2|chr33 (14012931-14013355) | |
| 1-123, gnl|dasNov1|scaffold_38096 (10977-11377) | |
| 1-123, gnl|echTel1|scaffold_271982 (6823-6391) | |
| 1-123, gnl|hg17|chr3 (106556923-106557342) | |
| 1-123, gnl|Hg17|chr3 (106556925-106557045) | |
| 1-123, gnl|mm7|chr16 (52299174-52298770) | |
| 1-123, gnl|Mm7|chr16 (52299170-52299050) | |
| 1-123, gnl|oryCun1|scaffold_212269 (185637-185224) | |
| 1-123, gnl|panTro1|chr2 (108040622-108041041) | |
| 1-123, gnl|rheMac2|chr2 (25486710-25487129) | |
| 1-123, gnl|rn3|chr11 (49462809-49463213) | |
| 173-383, gnl|bosTau2|chr1 (24995521-24995737) | |
| 173-383, gnl|canFam2|chr33 (14014844-14015067) | |
| 173-383, gnl|echTel1|scaffold_271982 (2897-2659) | |
| 173-383, gnl|hg17|chr3 (106559076-106559298) | |
| 173-383, gnl|Hg17|chr3 (106559122-106559352) | |
| 173-383, gnl|loxAfr1|scaffold_70968 (5621-5865) | |
| 173-383, gnl|mm7|chr16 (52296280-52296024) | |
| 173-383, gnl|Mm7|chr16 (52296232-52295972) | |
| 173-383, gnl|monDom2|scaffold_50 (3150264-3150004) | |
| 173-383, gnl|oryCun1|scaffold_212269 (183478-183231) | |
| 173-383, gnl|panTro1|chr2 (108042773-108042995) | |
| 173-383, gnl|rheMac2|chr2 (25488852-25489074) | |
| 173-383, gnl|rn3|chr11 (49470825-49471078) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.230681) |