Non-Coding RNA Search

rnbm11b_j12.y1

Sequence:


               
               CAGAGCCACGCTCGGGTGTCCGCTGGGAGACTGACACCTGAAAGCCAGAGCAAACCTGCG
GAAGCACTGAAAGGGCCAGCCCTGCTTCCCGAACCACTGAAGCCTCAGGCTGCCCTTCCG
GTGCAGCCTTCCCTGCCCCCCGCCGTTCAAAAGATGCAGGAGCCTCTTGTCCCCGTGGCA
GCGCCCCTGCCTCCGTCCGCCCCGCAGCCCAGCCTGGAAACCCCGCCACAGCCGCCCCCC
CGGAGCAGGTCGTCACACAGCTTGCCGGCCGATCCCCCGGCCCAACCGCAGGTAAAAACA
AACGGAGTCTCCGCCGTCAGACTGGACTCGCCATTAAAGAGTGACCCGTTTGAAGACCTG
TCGTTGAATCTGCTTACTGTATTAAAGGATCAGTTCCCTGTTCAAACCCCAGACCCAGAG
GGGTTGATTCCGTTGCCTTGCGCAACCCCAGGCAACACGAATACTTTGAGTTCTGCAAGC
TGCATGCCGACAATGCCTCCAATTCCAGCCCGGAGTAAATCCCAGGAAAACACACGCTGT
TCGCCAAACCCATTCGTCACGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGCCACGCTCGGGTGTCCGCTGGGAGACTGACACCTGAAAGCCAGAGCAAACCTGCG
GAAGCACTGAAAGGGCCAGCCCTGCTTCCCGAACCACTGAAGCCTCAGGCTGCCCTTCCG
GTGCAGCCTTCCCTGCCCCCCGCCGTTCAAAAGATGCAGGAGCCTCTTGTCCCCGTGGCA
GCGCCCCTGCCTCCGTCCGCCCCGCAGCCCAGCCTGGAAACCCCGCCACAGCCGCCCCCC
CGGAGCAGGTCGTCACACAGCTTGCCGGCCGATCCCCCGGCCCAACCGCAGGTAAAAACA
AACGGAGTCTCCGCCGTCAGACTGGACTCGCCATTAAAGAGTGACCCGTTTGAAGACCTG
TCGTTGAATCTGCTTACTGTATTAAAGGATCAGTTCCCTGTTCAAACCCCAGACCCAGAG
GGGTTGATTCCGTTGCCTTGCGCAACCCCAGGCAACACGAATACTTTGAGTTCTGCAAGC
TGCATGCCGACAATGCCTCCAATTCCAGCCCGGAGTAAATCCCAGGAAAACACACGCTGT
TCGCCAAACCCATTCGTCACGAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               72-176, - strand, RNAz p=0.729444

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-176, - strand, RNAz p=0.729444

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               72-295, gnl|bosTau2|chr1 (341330-341092)
               

               
               72-295, gnl|canFam2|chr31 (30334662-30334931)
               

               
               72-295, gnl|echTel1|scaffold_311090 (3296-3569)
               

               
               72-295, gnl|galGal2|chr1 (98768289-98768538)
               

               
               72-295, gnl|hg17|chr21 (32933060-32933333)
               

               
               72-295, gnl|Hg17|chr21 (32933308-32933085)
               

               
               72-295, gnl|loxAfr1|scaffold_12337 (24725-24458)
               

               
               72-295, gnl|mm7|chr16 (90994245-90994503)
               

               
               72-295, gnl|Mm7|chr16 (90994478-90994252)
               

               
               72-295, gnl|monDom2|scaffold_29 (15444812-15444538)
               

               
               72-295, gnl|oryCun1|scaffold_204801 (71626-71373)
               

               
               72-295, gnl|panTro1|chr22 (32896094-32896367)
               

               
               72-295, gnl|rheMac2|chr3 (13892215-13891942)
               

               
               72-295, gnl|rn3|chr11 (30928792-30929061)
               

               
               72-295, gnl|xenTro1|scaffold_390 (906568-906850)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-295, gnl|bosTau2|chr1 (341330-341092)
               

               
               72-295, gnl|canFam2|chr31 (30334662-30334931)
               

               
               72-295, gnl|echTel1|scaffold_311090 (3296-3569)
               

               
               72-295, gnl|galGal2|chr1 (98768289-98768538)
               

               
               72-295, gnl|hg17|chr21 (32933060-32933333)
               

               
               72-295, gnl|Hg17|chr21 (32933308-32933085)
               

               
               72-295, gnl|loxAfr1|scaffold_12337 (24725-24458)
               

               
               72-295, gnl|mm7|chr16 (90994245-90994503)
               

               
               72-295, gnl|Mm7|chr16 (90994478-90994252)
               

               
               72-295, gnl|monDom2|scaffold_29 (15444812-15444538)
               

               
               72-295, gnl|oryCun1|scaffold_204801 (71626-71373)
               

               
               72-295, gnl|panTro1|chr22 (32896094-32896367)
               

               
               72-295, gnl|rheMac2|chr3 (13892215-13891942)
               

               
               72-295, gnl|rn3|chr11 (30928792-30929061)
               

               
               72-295, gnl|xenTro1|scaffold_390 (906568-906850)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	72-295, gnl\|bosTau2\|chr1 (341330-341092)
	72-295, gnl\|canFam2\|chr31 (30334662-30334931)
	72-295, gnl\|echTel1\|scaffold_311090 (3296-3569)
	72-295, gnl\|galGal2\|chr1 (98768289-98768538)
	72-295, gnl\|hg17\|chr21 (32933060-32933333)
	72-295, gnl\|Hg17\|chr21 (32933308-32933085)
	72-295, gnl\|loxAfr1\|scaffold_12337 (24725-24458)
	72-295, gnl\|mm7\|chr16 (90994245-90994503)
	72-295, gnl\|Mm7\|chr16 (90994478-90994252)
	72-295, gnl\|monDom2\|scaffold_29 (15444812-15444538)
	72-295, gnl\|oryCun1\|scaffold_204801 (71626-71373)
	72-295, gnl\|panTro1\|chr22 (32896094-32896367)
	72-295, gnl\|rheMac2\|chr3 (13892215-13891942)
	72-295, gnl\|rn3\|chr11 (30928792-30929061)
	72-295, gnl\|xenTro1\|scaffold_390 (906568-906850)