rnca01b_f14.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTATGGAGGAGATGCCCATTTGATGATGATGAAACCTGGACAAGTAGTTCCAAAGGCTA CAACTTGTTTCTTGTTGCTGCCCATGAGTTTGGCCATTCCTTAGGTCTTGACCACTCCAA GGACCCAGGAGCCCTCATGTTTCCTATCTATACCTACACTGGCAAAAGCCATTTTATGCT TCCTGATGATGATGTACAAGGGATCCAGTCTCTCTATGGACCAGGAGATGAAGACCCCAA CCCTAAACATCCCAAAACACCAGACAAATGTGATCCTTCATTATCCCTGGATGCCATTAC CAGTCTCCGAGGAGAAACCCTGATCTTTAAAGACAGATTCTTCTGGCGTCTGCATCCTCA GCAGGTTGATGCTGAGCTGTTCTTGACAAAATCATTTGGGCCAGAACTTCCCAACCGTAT CGATGCTGCATATGAGCACCCCACCCGTGACCTTATCTTCATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTATGGAGGAGATGCCCATTTGATGATGATGAAACCTGGACAAGTAGTTCCAAAGGCTA CAACTTGTTTCTTGTTGCTGCCCATGAGTTTGGCCATTCCTTAGGTCTTGACCACTCCAA GGACCCAGGAGCCCTCATGTTTCCTATCTATACCTACACTGGCAAAAGCCATTTTATGCT TCCTGATGATGATGTACAAGGGATCCAGTCTCTCTATGGACCAGGAGATGAAGACCCCAA CCCTAAACATCCCAAAACACCAGACAAATGTGATCCTTCATTATCCCTGGATGCCATTAC CAGTCTCCGAGGAGAAACCCTGATCTTTAAAGACAGATTCTTCTGGCGTCTGCATCCTCA GCAGGTTGATGCTGAGCTGTTCTTGACAAAATCATTTGGGCCAGAACTTCCCAACCGTAT CGATGCTGCATATGAGCACCCCACCCGTGACCTTATCTTCATCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 325-443, - strand, RNAz p=0.508735 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 325-443, - strand, RNAz p=0.508735 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 55-219, gnl|bosTau2|chr15 (1043949-1044113) | |
| 55-219, gnl|canFam2|chr5 (31933077-31932917) | |
| 55-219, gnl|danRer3|chr7 (23569751-23569906) | |
| 55-219, gnl|dasNov1|scaffold_69563 (3598-3442) | |
| 55-219, gnl|echTel1|scaffold_319990 (91823-91983) | |
| 55-219, gnl|fr1|chrUn (118068872-118069033) | |
| 55-219, gnl|galGal2|chr1 (174406682-174406526) | |
| 55-219, gnl|hg17|chr11 (102243845-102244005) | |
| 55-219, gnl|Hg17|chr11 (102244011-102243848) | |
| 55-219, gnl|loxAfr1|scaffold_5307 (62228-62388) | |
| 55-219, gnl|mm7|chr9 (7350370-7350210) | |
| 55-219, gnl|Mm7|chr9 (7350201-7350365) | |
| 55-219, gnl|monDom2|scaffold_65 (8149951-8150107) | |
| 55-219, gnl|oryCun1|scaffold_199490 (38719-38559) | |
| 55-219, gnl|panTro1|chr9 (104226633-104226793) | |
| 55-219, gnl|rheMac2|chr14 (101487369-101487529) | |
| 55-219, gnl|rn3|chr8 (4255354-4255194) | |
| 55-219, gnl|tetNig1|chrUn_random (50663614-50663455) | |
| 55-219, gnl|xenTro1|scaffold_601 (596316-596476) | |
| 325-464, gnl|bosTau2|chr23 (15594838-15594977) | |
| 325-464, gnl|canFam2|chr5 (31868864-31868681) | |
| 325-464, gnl|danRer3|chrNA (191086149-191086000) | |
| 325-464, gnl|dasNov1|scaffold_2662 (127631-127814) | |
| 325-464, gnl|echTel1|scaffold_264056 (3565-3725) | |
| 325-464, gnl|fr1|chrUn (269955109-269954931) | |
| 325-464, gnl|galGal2|chr1 (174345790-174345620) | |
| 325-464, gnl|hg17|chr11 (102324945-102325125) | |
| 325-464, gnl|Hg17|chr11 (102325109-102324970) | |
| 325-464, gnl|loxAfr1|scaffold_25520 (38480-38304) | |
| 325-464, gnl|mm7|chr9 (7276158-7275982) | |
| 325-464, gnl|Mm7|chr9 (7275992-7276131) | |
| 325-464, gnl|monDom2|scaffold_65 (8244128-8244303) | |
| 325-464, gnl|oryCun1|scaffold_213402 (7142-7325) | |
| 325-464, gnl|panTro1|chr9 (104308378-104308558) | |
| 325-464, gnl|rheMac2|chr14 (101561007-101561187) | |
| 325-464, gnl|rn3|chr8 (4165134-4164958) | |
| 325-464, gnl|tetNig1|chrUn_random (14427632-14427463) | |
| 325-464, gnl|xenTro1|scaffold_601 (662182-662338) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-219, gnl|bosTau2|chr15 (1043949-1044113) | |
| 55-219, gnl|canFam2|chr5 (31933077-31932917) | |
| 55-219, gnl|danRer3|chr7 (23569751-23569906) | |
| 55-219, gnl|dasNov1|scaffold_69563 (3598-3442) | |
| 55-219, gnl|echTel1|scaffold_319990 (91823-91983) | |
| 55-219, gnl|fr1|chrUn (118068872-118069033) | |
| 55-219, gnl|galGal2|chr1 (174406682-174406526) | |
| 55-219, gnl|hg17|chr11 (102243845-102244005) | |
| 55-219, gnl|Hg17|chr11 (102244011-102243848) | |
| 55-219, gnl|loxAfr1|scaffold_5307 (62228-62388) | |
| 55-219, gnl|mm7|chr9 (7350370-7350210) | |
| 55-219, gnl|Mm7|chr9 (7350201-7350365) | |
| 55-219, gnl|monDom2|scaffold_65 (8149951-8150107) | |
| 55-219, gnl|oryCun1|scaffold_199490 (38719-38559) | |
| 55-219, gnl|panTro1|chr9 (104226633-104226793) | |
| 55-219, gnl|rheMac2|chr14 (101487369-101487529) | |
| 55-219, gnl|rn3|chr8 (4255354-4255194) | |
| 55-219, gnl|tetNig1|chrUn_random (50663614-50663455) | |
| 55-219, gnl|xenTro1|scaffold_601 (596316-596476) | |
| 325-464, gnl|bosTau2|chr23 (15594838-15594977) | |
| 325-464, gnl|canFam2|chr5 (31868864-31868681) | |
| 325-464, gnl|danRer3|chrNA (191086149-191086000) | |
| 325-464, gnl|dasNov1|scaffold_2662 (127631-127814) | |
| 325-464, gnl|echTel1|scaffold_264056 (3565-3725) | |
| 325-464, gnl|fr1|chrUn (269955109-269954931) | |
| 325-464, gnl|galGal2|chr1 (174345790-174345620) | |
| 325-464, gnl|hg17|chr11 (102324945-102325125) | |
| 325-464, gnl|Hg17|chr11 (102325109-102324970) | |
| 325-464, gnl|loxAfr1|scaffold_25520 (38480-38304) | |
| 325-464, gnl|mm7|chr9 (7276158-7275982) | |
| 325-464, gnl|Mm7|chr9 (7275992-7276131) | |
| 325-464, gnl|monDom2|scaffold_65 (8244128-8244303) | |
| 325-464, gnl|oryCun1|scaffold_213402 (7142-7325) | |
| 325-464, gnl|panTro1|chr9 (104308378-104308558) | |
| 325-464, gnl|rheMac2|chr14 (101561007-101561187) | |
| 325-464, gnl|rn3|chr8 (4165134-4164958) | |
| 325-464, gnl|tetNig1|chrUn_random (14427632-14427463) | |
| 325-464, gnl|xenTro1|scaffold_601 (662182-662338) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |