Non-Coding RNA Search

rnca03b_e8.y1

Sequence:


               
               CAGACAATTATGAGTGCAACCGATGGGCACCAGATATCTACTGTCCTCGAGAGACTAGAT
ACTGCTACACTCAGCACACAATGGAAGTCACAGGAAACAGCATCTCTGTCACCAAGCGCT
GCGTTCCACTGGAAGACTGCTTGTCCACTGGCTGCAGGGACTCCGAGCATGAAGGCCACA
AGGTCTGCACTTCCTGTTGTGAAGGAAATATCTGTAATTTGCCACTCCCCCGGAATGAAA
CTGAAGCCACATTTGCCACAACATCACCCATAAATCAGACAAACGGGCACCCACACTGCA
TGTCAGTGATAGTGTCCTGCTTGTGGGTGTGGTTGGGACTCACATTATAGTTGCTCACAG
GCACCATGGGTAGTAGCGTCCACCAGGATTTCCATGGTCCCTGGTCATGCATGAGTCATT
GGCCTGACCGTAGTTACACATGTAAAACCATAGCACTCACGTCTTCATAGCCAAGCACTT
CCACTTACCGTGAGGAACAAACATTGCTTCCATGTAGTCATTTCAAGTCCAAGACCTCAT
CAAAGCAGCCTGCCTCCAGCACAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGACAATTATGAGTGCAACCGATGGGCACCAGATATCTACTGTCCTCGAGAGACTAGAT
ACTGCTACACTCAGCACACAATGGAAGTCACAGGAAACAGCATCTCTGTCACCAAGCGCT
GCGTTCCACTGGAAGACTGCTTGTCCACTGGCTGCAGGGACTCCGAGCATGAAGGCCACA
AGGTCTGCACTTCCTGTTGTGAAGGAAATATCTGTAATTTGCCACTCCCCCGGAATGAAA
CTGAAGCCACATTTGCCACAACATCACCCATAAATCAGACAAACGGGCACCCACACTGCA
TGTCAGTGATAGTGTCCTGCTTGTGGGTGTGGTTGGGACTCACATTATAGTTGCTCACAG
GCACCATGGGTAGTAGCGTCCACCAGGATTTCCATGGTCCCTGGTCATGCATGAGTCATT
GGCCTGACCGTAGTTACACATGTAAAACCATAGCACTCACGTCTTCATAGCCAAGCACTT
CCACTTACCGTGAGGAACAAACATTGCTTCCATGTAGTCATTTCAAGTCCAAGACCTCAT
CAAAGCAGCCTGCCTCCAGCACAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545683|emb|CAH56278.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545683|emb|CAH56278.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               455-558, - strand, RNAz p=0.98003

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               455-558, - strand, RNAz p=0.98003

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               181-558, gnl|bosTau2|chr2 (32950794-32951168)
               

               
               181-558, gnl|Hg17|chr2 (150152703-150153084)
               

               
               181-558, gnl|Mm7|chr2 (50197959-50198361)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-558, gnl|bosTau2|chr2 (32950794-32951168)
               

               
               181-558, gnl|Hg17|chr2 (150152703-150153084)
               

               
               181-558, gnl|Mm7|chr2 (50197959-50198361)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	181-558, gnl\|bosTau2\|chr2 (32950794-32951168)
	181-558, gnl\|Hg17\|chr2 (150152703-150153084)
	181-558, gnl\|Mm7\|chr2 (50197959-50198361)