rnca04b_n3.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAAAGCAAGAGGAAGATTGGTTGTGTCTGGAAAGCCCAGTTACTCAATGAATATGTGGC TGTGAAAATATTTCCAATACAGGACAAACAGTCATGGCAAAATGAATATGAAGTCTATAG TTTGCCTGAAATGAAGCATGAGAACATATTACAGTTCATTGGTGCAGAAAAACGAGGTAC CAGTGTTGATGTGGATCTTTGGCTAATCACAGCATTTCATGAAAAGGGTTCATTGTCAGA CTTTCTTAAGGCTAATGTGGTCTCTTGGAATGAATTGTGTCATATTGCAGAAACCATGGC TCGAGGATTGGCATATTTACATGAGGATATACCTGGCCTAAAAGATGGCCACAAACCTGC CATATCTCACAGGGACATCAAAAGTAAAAATGTGCTATTGAAGAACAATCTGACTGCTTG TATTGCTGACTTTGGGTTGGCATTAAAGTTTGAGGCTGGCAAGTCTGCAGGTGATACCCA TGGGCAGGTTGGTACCCGGAGGTATATGGCTCCAGAAGTATTAGAGGGTGCTATAAACTT CCAAAGGGATGCATTTTTGAGGATAGATATGTATGCCATGGGATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAAAGCAAGAGGAAGATTGGTTGTGTCTGGAAAGCCCAGTTACTCAATGAATATGTGGC TGTGAAAATATTTCCAATACAGGACAAACAGTCATGGCAAAATGAATATGAAGTCTATAG TTTGCCTGAAATGAAGCATGAGAACATATTACAGTTCATTGGTGCAGAAAAACGAGGTAC CAGTGTTGATGTGGATCTTTGGCTAATCACAGCATTTCATGAAAAGGGTTCATTGTCAGA CTTTCTTAAGGCTAATGTGGTCTCTTGGAATGAATTGTGTCATATTGCAGAAACCATGGC TCGAGGATTGGCATATTTACATGAGGATATACCTGGCCTAAAAGATGGCCACAAACCTGC CATATCTCACAGGGACATCAAAAGTAAAAATGTGCTATTGAAGAACAATCTGACTGCTTG TATTGCTGACTTTGGGTTGGCATTAAAGTTTGAGGCTGGCAAGTCTGCAGGTGATACCCA TGGGCAGGTTGGTACCCGGAGGTATATGGCTCCAGAAGTATTAGAGGGTGCTATAAACTT CCAAAGGGATGCATTTTTGAGGATAGATATGTATGCCATGGGATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 256-373, + strand, RNAz p=0.972068 | |
| 485-585, + strand, RNAz p=0.840526 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 256-373, + strand, RNAz p=0.972068 | |
| 485-585, + strand, RNAz p=0.840526 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 225-373, gnl|bosTau2|chr2 (31805112-31804964) | |
| 225-373, gnl|Hg17|chr2 (148509746-148509894) | |
| 225-373, gnl|Mm7|chr2 (48900816-48900964) | |
| 485-585, gnl|bosTau2|chr2 (31800823-31800723) | |
| 485-585, gnl|canFam2|chr19 (52741131-52741310) | |
| 485-585, gnl|danRer3|chr15 (17312235-17312090) | |
| 485-585, gnl|dasNov1|scaffold_22721 (15915-15736) | |
| 485-585, gnl|echTel1|scaffold_312218 (2008-1829) | |
| 485-585, gnl|fr1|chrUn (18071204-18071359) | |
| 485-585, gnl|galGal2|chr7 (35212560-35212713) | |
| 485-585, gnl|hg17|chr2 (148514246-148514426) | |
| 485-585, gnl|Hg17|chr2 (148514271-148514371) | |
| 485-585, gnl|loxAfr1|scaffold_34021 (3517-3682) | |
| 485-585, gnl|mm7|chr2 (48904255-48904434) | |
| 485-585, gnl|Mm7|chr2 (48904280-48904380) | |
| 485-585, gnl|monDom2|scaffold_2 (38051721-38051905) | |
| 485-585, gnl|oryCun1|scaffold_110720 (16338-16159) | |
| 485-585, gnl|rheMac2|chr12 (11470873-11471052) | |
| 485-585, gnl|rn3|chr3 (29700973-29701152) | |
| 485-585, gnl|tetNig1|chr3 (778334-778490) | |
| 485-585, gnl|xenTro1|scaffold_216 (100806-100635) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 225-373, gnl|bosTau2|chr2 (31805112-31804964) | |
| 225-373, gnl|Hg17|chr2 (148509746-148509894) | |
| 225-373, gnl|Mm7|chr2 (48900816-48900964) | |
| 485-585, gnl|bosTau2|chr2 (31800823-31800723) | |
| 485-585, gnl|canFam2|chr19 (52741131-52741310) | |
| 485-585, gnl|danRer3|chr15 (17312235-17312090) | |
| 485-585, gnl|dasNov1|scaffold_22721 (15915-15736) | |
| 485-585, gnl|echTel1|scaffold_312218 (2008-1829) | |
| 485-585, gnl|fr1|chrUn (18071204-18071359) | |
| 485-585, gnl|galGal2|chr7 (35212560-35212713) | |
| 485-585, gnl|hg17|chr2 (148514246-148514426) | |
| 485-585, gnl|Hg17|chr2 (148514271-148514371) | |
| 485-585, gnl|loxAfr1|scaffold_34021 (3517-3682) | |
| 485-585, gnl|mm7|chr2 (48904255-48904434) | |
| 485-585, gnl|Mm7|chr2 (48904280-48904380) | |
| 485-585, gnl|monDom2|scaffold_2 (38051721-38051905) | |
| 485-585, gnl|oryCun1|scaffold_110720 (16338-16159) | |
| 485-585, gnl|rheMac2|chr12 (11470873-11471052) | |
| 485-585, gnl|rn3|chr3 (29700973-29701152) | |
| 485-585, gnl|tetNig1|chr3 (778334-778490) | |
| 485-585, gnl|xenTro1|scaffold_216 (100806-100635) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |